- IPT - lists.gbif.org

Re: [IPT] IPT Digest, Vol 63, Issue 4
by Dinesh Singh Pundir 17 Sep '15

17 Sep '15

Dear Kyle, I have upgraded the IPT v2.3.1 released but there is one issue. I am not able to see the users which where there in the earlier version. Secondly a new user cannot be created in this version. Kindly look into it. Regards Dinesh Pundir WII, INDIA Node On 9/16/2015 3:30 PM, ipt-request(a)lists.gbif.org wrote: > Send IPT mailing list submissions to > ipt(a)lists.gbif.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.gbif.org/mailman/listinfo/ipt > or, via email, send a message with subject or body 'help' to > ipt-request(a)lists.gbif.org > > You can reach the person managing the list at > ipt-owner(a)lists.gbif.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of IPT digest..." > > > Today's Topics: > > 1. IPT v2.3.1 released (Kyle Braak) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 15 Sep 2015 17:14:36 +0200 > From: Kyle Braak <kbraak(a)gbif.org> > To: ipt(a)lists.gbif.org > Subject: [IPT] IPT v2.3.1 released > Message-ID: <6D664F2A-BEC1-4CD5-9FAA-7F5E209F3587(a)gbif.org> > Content-Type: text/plain; charset="windows-1252" > > Dear IPT users, > > A new minor release of the IPT (v2.3.1) has been released and is available for download here [1]. > > This minor release fixes a bug [2] limited to IPT version 2.3, and affects resources whose metadata: > contains non-English characters > was edited after upgrading to version 2.3 > To fix the problem, please upgrade to 2.3.1 and fix badly encoded characters in your metadata. > > Instructions on how to upgrade your IPT can be found in the IPT?s Release Notes [3]. > > Sorry for the inconvenience this bug may have caused you, > > Kyle > > [1] http://repository.gbif.org/content/groups/gbif/org/gbif/ipt/2.3.1/ipt-2.3.1… > [2] https://github.com/gbif/ipt/issues/1197 > [3] https://github.com/gbif/ipt/wiki/IPTReleaseNotes23.wiki >

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IPT v2.3.1 released
by Kyle Braak 15 Sep '15

15 Sep '15

Dear IPT users, A new minor release of the IPT (v2.3.1) has been released and is available for download here [1]. This minor release fixes a bug [2] limited to IPT version 2.3, and affects resources whose metadata: contains non-English characters was edited after upgrading to version 2.3 To fix the problem, please upgrade to 2.3.1 and fix badly encoded characters in your metadata. Instructions on how to upgrade your IPT can be found in the IPT’s Release Notes [3]. Sorry for the inconvenience this bug may have caused you, Kyle [1] http://repository.gbif.org/content/groups/gbif/org/gbif/ipt/2.3.1/ipt-2.3.1… [2] https://github.com/gbif/ipt/issues/1197 [3] https://github.com/gbif/ipt/wiki/IPTReleaseNotes23.wiki

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IPT v2.3 released
by Kyle Braak 10 Sep '15

10 Sep '15

Dear IPT users, The GBIF Secretariat is pleased to announce that a new release of the Integrated Publishing Toolkit [1] (IPT v2.3) is now available for download here [2]. This version supports publishing sample-based datasets, realising the new features that were in prototype at the EU BON IPT [3]. For information about how to upgrade your installation, as well as enable publishing sample-based datasets, please check out the Release Notes [4]. New users should follow the installation guidelines in the IPT User Manual [5] that has been updated for this version. Thank you once again for using the IPT, and we hope you enjoy the latest version. With kind regards, Kyle, on behalf of the GBIF development team and the GBIF Secretariat PS: Please note that the IPT project site has officially moved to GitHub [6] now. [1] http://www.gbif.org/ipt [2] http://repository.gbif.org/content/groups/gbif/org/gbif/ipt/2.3/ipt-2.3.war [3] http://eubon-ipt.gbif.org/ [4] https://github.com/gbif/ipt/wiki/IPTReleaseNotes23.wiki [5] https://github.com/gbif/ipt/wiki/IPT2ManualNotes.wiki [6] https://github.com/gbif/ipt

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Re: [IPT] How to build IPT from source?
by Francisco Moura 27 Aug '15

27 Aug '15

Hi Kyle, thanks for your replay. The compilation error was not fixed, even entering the command mvn clean -U -Prelease package. I noticed that inside my ~/.m2/repository/com/lowagie/itext/4.2.1 there isn't the itext-4.2.1.jar file, even using the commands mvn clean -U -Prelease package, mvn -U -Prelease package, etc; Visiting the page http://mvnrepository.com/artifact/com.lowagie/itext/4.2.1 we can notice that the artifact was moved to a new group. So, I will download a package from gbif build repository for our purpose. If possible, I would ask you to let me know when the source from github are ready to build. Br, Francisco Moura +55 (31) 8277-8448 (Claro) 2015-08-26 5:45 GMT-03:00 Kyle Braak <kbraak(a)gbif.org>: > Hi Francisco, > > I noticed this error myself when testing an upgrade to a newer version of > the com.lowagie:itext dependency. > > Why don’t you try the command below including -U to tell Maven to use the > latest dependency versions. > > #mvn clean -U -Prelease package > > Below are my Maven, Java, and OS versions I am using in case that helps > you: > > dhcp-12:ipt kbraak$ mvn --version > Apache Maven 3.2.3 (33f8c3e1027c3ddde99d3cdebad2656a31e8fdf4; > 2014-08-11T22:58:10+02:00) > Java version: 1.8.0_45, vendor: Oracle Corporation > OS name: "mac os x", version: "10.9.5", arch: "x86_64", family: “mac" > > Let me know if you have success or not, > > Kyle > > PS1: You can monitor whether the IPT will build successfully from source > here: http://builds.gbif.org/job/ipt/ If the last build was ‘blue’ it > will build successfully :) > > PS2: The IPT mailing list (http://lists.gbif.org/mailman/listinfo/ipt) is > ideal for these types of questions. That way your question reaches a > broader audience around the world, and you have a better chance of getting > a response when the GBIF Secretariat is out of office > > On 26 Aug 2015, at 05:56, Francisco Moura <franciscomoura(a)gmail.com> > wrote: > > > Hi Kyle, I hope you are doing well! > > > > I need to build IPT from source. So, my environment setup is: > > - Oracle JDK 7 and 8 > > - Maven 3.3.3 > > > > When I try to build the application, a lot of errors are showed. > > The output process is inside the attached file. > > > > I had cloned the source from github.com/gbif/ipt, and I issued the mvn > install command and the build failed. > > > > My questions are: > > 1) The source from github are ready to do the IPT build? > > 2) Which is the correct environment setup to build the IPT with success > from source? > > > > Thanks for your attention. > > > > Best regards, > > > > Francisco Moura > > +55 (31) 8277-8448 (Claro) > > <build-error.txt> > >

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IPT v2.3 - release candidate
by Kyle Braak 20 Aug '15

20 Aug '15

Dear IPT users, A release candidate of IPT v2.3 is now available for download [1]. Please note this release is only intended for testing, and should not be installed in production. If you don’t have time to install it, you can always try it out at http://ipt.gbif-uat.org/ [2] (just email me if you want an account). Its most notable enhancements include: Support for publishing sample-based datasets, incorporating all the changes now in the prototype at the EU BON IPT [3] Support for versionable IPT extensions, making it possible to update to newer versions whenever they become available A slightly redesigned mapping page, making it easier to map your source data If no major problems are uncovered during testing, IPT v2.3 will be released next week. In the meantime, volunteer translators are hard at work, and the user manual is being updated. Thank you for your attention and help, Kyle, on behalf of the IPT development team and the GBIF Secretariat [1] https://dl.dropboxusercontent.com/u/4552753/ipt-2.3-rc1.war [2] http://ipt.gbif-uat.org/ [3] http://eubon-ipt.gbif.org/

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Static assets URLs
by Nicolas Noé 04 Aug '15

04 Aug '15

Hi, I have just installed an instance of IPT 2.3RC on my Mac OS X laptop using Tomcat 7 (manually installed). It's working perfectly fine as long as I access it on the local machine, using localhost URLs. I'd like to make it accessible from other hosts on the local network (to be used as a test server during GB22 training events in Antananarivo). It seems the (generated) URLs for IPT static assets (CSS, JS, ...) always start with "http://localhost:8080", even when the page is requested from a different URL such as http://10.209.1.58:8080/ipt-2.3-rc1 . So from another machine, I can get the basic page, but with 404 errors on all static files. I feel this is maybe related to https://github.com/gbif/ipt/issues/817, and comes from the fact that the IPT doesn't use the queried URL as a base for generating other URLs. Is there an easy way for me to circumvent this problem? Should I put a reverse proxy in front of Tomcat ? Any sample, working configuration for that ? Thanks, Nicolas

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(no subject)
by Dimitri Brosens 26 Jun '15

26 Jun '15

Dear, I was wondering, in DwC it is stated: *Recommended best practice is to use a controlled vocabulary such as the list of Darwin Core classes. Examples: "PreservedSpecimen", "FossilSpecimen", "LivingSpecimen", "HumanObservation", "MachineObservation". For discussion see http://terms.tdwg.org/wiki/dwc:basisOfRecord <http://terms.tdwg.org/wiki/dwc:basisOfRecord>* As far as I understand, this is not mandatory and we have been using terms which are not in the 'supposed' controlled vocabulary on the tdwg site.... Publishing version #22.1 of resource belgian-coccinellidae-inbo-occurrences failed: Archive generation for resource belgian-coccinellidae-inbo-occurrences failed: Can't validate DwC-A for resource belgian-coccinellidae-inbo-occurrences. Each row in the occurrence file(s) must have a basisOfRecord, and each basisOfRecord must match the Darwin Core Type Vocabulary (please note comparisons are case insensitive) Continue to resource overview. My problem is that IPT refuses to republish my previously published datasets where we use terms like: 'literatureObservation' , 'literature', fieldObservation or 'unknown What to do? Chrs, Dimi -- Belgian Biodiversity Platform Dimitri Brosens Biodiversity Research Liaison Officer Research Institute for Nature and Forest Kliniekstraat 25 1070 Brussels ORCID: 0000-0002-0846-9116 www.inbo.be www.biodiversity.be www.beescommunity.be *WATCH OUR BELGIAN BIODIVERSITY PLATFORM MOVIES ON:* http://vimeo.com/114955090 (data publication activities) http://vimeo.com/114955160 (science-policy activities) http://vimeo.com/114955193 (our general mission) <http://www.biodiversity.be/>

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Re: [IPT] Java 6
by George Perantinos 23 Jun '15

23 Jun '15

Hey Kyle! We're still running IPT under java 6. But we're in the process of getting rid of java 6 everywhere in our data center. I believe that it's a matter of weeks. Best regards, George

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Java 6
by Kyle Braak 22 Jun '15

22 Jun '15

Dear IPT Users, The IPT currently supports running on a server with Java 6. As you may be aware, Java 7 reached its end of life in April 2015. Consequently, the GBIF development team is now in the process of upgrading its projects to use Java 8 instead. If you’re still using Java 6 to run your IPT, can you please let us know? Don’t worry if you are, because the imminent release of version 2.3 will still support Java 6. Thank you for your time and attention, Kyle, on behalf of the GBIF development team

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No resources can be created until at least one organisation able to host resources is associated to the IPT
by Julien Husson 09 Jun '15

09 Jun '15

Hi, I installed the last version of IPT(v2.2.1), I can no longer manage my resource in test mode 'cause the IPT ask to me to add an organisation when i want to create a new resource No resources can be created until at least one organisation able to host > resources is associated to the IPT. Please contact your IPT administrator > for help. Is it a bug ? misconfiguration ? Thx, Julien

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