- IPT - lists.gbif.org

IPT v2.3.3 released
by Kyle Braak 10 Jan '17

10 Jan '17

Dear IPT users, The GBIF Secretariat is pleased to announce that IPT v2.3.3 has now been released and is available for download from the IPT website<http://www.gbif.org/ipt> [1]. This version looks and feels the same as v2.3.2 but is much more robust and secure. I'd like to recommend that all existing IPT installations be upgraded as soon as possible following the instructions listed in the release notes<https://github.com/gbif/ipt/wiki/IPTReleaseNotes233.wiki> [2]. You can find out more about the new features added to this version in this blog post<http://gbif.blogspot.dk/2017/01/ipt-v233-your-repository-for.html> [3]. I would like to extend my sincerest thanks to everyone that contributed to the making of this new release, and I hope you all enjoy using this latest version! Best regards, Kyle Braak IPT Product Manager GBIF Secretariat [1] http://www.gbif.org/ipt [2] https://github.com/gbif/ipt/wiki/IPTReleaseNotes233.wiki [3] http://gbif.blogspot.dk/2017/01/ipt-v233-your-repository-for.html

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high availability
by Julien Cigar 14 Nov '16

14 Nov '16

Hello, I'm busy to setup some HA/LB for our services here, and IPT is the next candidate. I wondered if some sort of locking is implemented in the IPT code to avoid possible corruption of the data directory if shared between the instances (through NFS4)? Thanks, Julien -- Julien Cigar Belgian Biodiversity Platform (http://www.biodiversity.be) PGP fingerprint: EEF9 F697 4B68 D275 7B11 6A25 B2BB 3710 A204 23C0 No trees were killed in the creation of this message. However, many electrons were terribly inconvenienced.

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Pre-release v2.3.3
by Kyle Braak 02 Nov '16

02 Nov '16

Dear IPT users, A pre-release version of IPT v2.3.3 is online for wider testing at http://ipt.gbif-uat.org/ It can also be downloaded here<https://dl.dropboxusercontent.com/u/4552753/ipt-2.3.3-SNAPSHOT-r3874f0a.war>[1] if you're interested, but please note that it is not yet ready to be installed in production. More than thirty bug fixes and enhancements are included in this version. Here are a few of its most notable changes: * Counts for all files in the DwC-A are now exposed on the resource homepage. This addresses an <https://github.com/gbif/ipt/issues/1130> enhancement<https://github.com/gbif/ipt/issues/1130>[2] requested by Laura Russell. View this example resource<http://ipt.gbif-uat.org/resource?r=bms_il_demo#dataRecords>[3] to see how it looks. * The interface has been translated into Russian thanks to the efforts of Ivan Chadin and several other dedicated volunteers. * The application can now be installed on a server behind a proxy, thanks to a fix<https://github.com/gbif/ipt/pull/1239>[4] submitted by Bruno P. Kinoshita. Note this project page in GitHub<https://github.com/gbif/ipt/projects/1>[5] provides a nice overview of all the issues addressed in this version, in case you're interested. At this stage, more rigorous testing is needed to ensure that the new version is as robust as possible. Then if no major issues are uncovered during the next few weeks of testing, IPT v2.3.3 will be released. So if you have a little time to help test that would be greatly appreciated. You can do so by logging on to http://ipt.gbif-uat.org and trying it out. If you need a new account setup or have problems accessing your existing account, please just send an email to helpdesk(a)gbif.org asking for help. As always you can use the GitHub issue tracker<https://github.com/gbif/ipt/issues>[6] to report new issues. Thank you for your attention and help. Best regards, Kyle Braak IPT Product Manager GBIF Secretariat Universitetsparken 15 2100 Copenhagen Ø Denmark http://www.gbif.org [1] https://dl.dropboxusercontent.com/u/4552753/ipt-2.3.3-SNAPSHOT-r3874f0a.war [2] https://github.com/gbif/ipt/issues/1130 [3] http://ipt.gbif-uat.org/resource?r=bms_il_demo#dataRecords [4] https://github.com/gbif/ipt/pull/1239 [5] https://github.com/gbif/ipt/projects/1 [6] https://github.com/gbif/ipt/issues

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Re: [IPT] IPT Digest, Vol 68, Issue 2
by Julien Husson 09 Sep '16

09 Sep '16

Thank you David ... note to myself RTFM ... Best On Fri, Sep 9, 2016 at 12:00 PM, <ipt-request(a)lists.gbif.org> wrote: > Send IPT mailing list submissions to > ipt(a)lists.gbif.org > > To subscribe or unsubscribe via the World Wide Web, visit > http://lists.gbif.org/mailman/listinfo/ipt > or, via email, send a message with subject or body 'help' to > ipt-request(a)lists.gbif.org > > You can reach the person managing the list at > ipt-owner(a)lists.gbif.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of IPT digest..." > > > Today's Topics: > > 1. Re: Disabled archive resource history (David Valentim Dias) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Thu, 8 Sep 2016 09:59:37 -0300 > From: David Valentim Dias <dvdscripter(a)gmail.com> > To: "ipt(a)lists.gbif.org list" <ipt(a)lists.gbif.org> > Subject: Re: [IPT] Disabled archive resource history > Message-ID: > <CAAy4ZDSc=ucHDaTGcaasuiF+oGkFHdr4a9B8hqMAPhG98SK16A@ > mail.gmail.com> > Content-Type: text/plain; charset="utf-8" > > With Admin user logged go to "Administration" -> "IPT Settings" -> uncheck > "Archival Mode" -> "Save" > > 2016-09-08 5:41 GMT-03:00 Julien Husson <biology.info(a)gmail.com>: > > > Dear all, > > > > Is it possible to disabled historical version; it cause me some trouble, > i > > got > > *IOException*: *No space* left on device > > > > 1/ ask my admin to increase my space drive > > > > 2/ hack IPT ? > > > > Best > > > > Julien > > > > _______________________________________________ > > IPT mailing list > > IPT(a)lists.gbif.org > > http://lists.gbif.org/mailman/listinfo/ipt > > > > >

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Disabled archive resource history
by Julien Husson 08 Sep '16

08 Sep '16

Dear all, Is it possible to disabled historical version; it cause me some trouble, i got *IOException*: *No space* left on device 1/ ask my admin to increase my space drive 2/ hack IPT ? Best Julien

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Re: [IPT] Publication of big dataset fails, can't find why
by Peter Desmet 03 Mar '16

03 Mar '16

Increased storage, which solved the issue. Thanks! André, I'm not aware of identical records, but if they have different occurrenceIDs, the IPT validation will pass. On Wed, Mar 2, 2016 at 5:06 PM, André Heughebaert <a.heughebaert(a)biodiversity.be> wrote: > Hi Peter, > > If I remember correctly the Florabank contains some identical records, > although having different IDs. > Could that be the reason of rejection by the IPT? > > Best regards, > André > > Le 02/03/16 15:59, Peter Desmet a écrit : > > Hi, > > We're trying to publish version 45.4 of this dataset: > http://data.inbo.be/ipt/resource?r=florabank1-occurrences, but the > validation seems to fail. Here's the publication log: > http://data.inbo.be/ipt/publicationlog.do?r=florabank1-occurrences > > As far as I can tell, the validation fails on "the core ID field > occurrenceID is always present and unique", but we have verified this > in the generated dwca-45.4.zip file, and all records have a unique > occurrenceID. > > Any idea what might be going on? Possible causes: > > 1. The dataset is quite big (3,5 million records) > 2. We've just solved this issue: > https://github.com/LifeWatchINBO/data-publication/issues/104 by > following Kyle Braak's instructions. The latest published version is > now 45.3, the current (to be published) version is 45.4, so everything > seems fine there. > 3. Even though the publication failed, the following files are created > in /resource/florabank1-occurrences: > > eml-45.4.xml > dwca-45.4,zip > florabank1-occurrences-45.4. > rtf > > Will those file be overwritten if I try to republish or might they be > causing the publication to fail? > > Thanks, > > Peter > _______________________________________________ > IPT mailing list > IPT(a)lists.gbif.org > http://lists.gbif.org/mailman/listinfo/ipt > > > -- > Ir Andre Heughebaert > Belgian Biodiversity Platform > +32(0)2238 3796 > Av. Louise 231 Louizalaan > B-1050 Brussels ORCID 0000-0002-7839-5300

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Publication of big dataset fails, can't find why
by Peter Desmet 02 Mar '16

02 Mar '16

Hi, We're trying to publish version 45.4 of this dataset: http://data.inbo.be/ipt/resource?r=florabank1-occurrences, but the validation seems to fail. Here's the publication log: http://data.inbo.be/ipt/publicationlog.do?r=florabank1-occurrences As far as I can tell, the validation fails on "the core ID field occurrenceID is always present and unique", but we have verified this in the generated dwca-45.4.zip file, and all records have a unique occurrenceID. Any idea what might be going on? Possible causes: 1. The dataset is quite big (3,5 million records) 2. We've just solved this issue: https://github.com/LifeWatchINBO/data-publication/issues/104 by following Kyle Braak's instructions. The latest published version is now 45.3, the current (to be published) version is 45.4, so everything seems fine there. 3. Even though the publication failed, the following files are created in /resource/florabank1-occurrences: eml-45.4.xml dwca-45.4,zip florabank1-occurrences-45.4.rtf Will those file be overwritten if I try to republish or might they be causing the publication to fail? Thanks, Peter

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migrate dataset from one IPT to another.
by Xander van der Sar 09 Dec '15

09 Dec '15

Dear GBIF Friends, We want to migrate a couple of datasets to an other IPT. There is a workflow for migrating from older publication tools [1] in the IPT manual. Can I use this workflow as well when the source publication tool is an IPT? Or do I have to follow another workflow. [1] https://code.google.com/p/gbif-providertoolkit/wiki/IPT2ManualNotes#Migrate… <https://code.google.com/p/gbif-providertoolkit/wiki/IPT2ManualNotes#Migrate…> All the best, Xander

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usage of occurrence in basiOfRecord.
by Xander van der Sar 09 Dec '15

09 Dec '15

Dear GBIF Friends, In the IPT v2.3.2 it is possible to select the default value “Occurrence” for the basisOfRecord in the mapping screen. This value is not in the basisOfRecord Enum [1]. Is this a replacement of the “observation” value? If so, does this value has the same purpose als the old Observation value? [1] http://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/BasisOfRecor… <http://gbif.github.io/gbif-api/apidocs/org/gbif/api/vocabulary/BasisOfRecor…> All the best, Xander van der Sar data manager NLBIF

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OAI-PMH On IPT
by Carlos Andres Beltran 23 Nov '15

23 Nov '15

Good Morning, We have implemented IPT at our institution ( http://i2d.humboldt.org.co/ceiba/). We need to do the harvest this catalog with others who have implemented. According to this URL: http://gbif.blogspot.com.co/2011/04/oia-pmh-harvesting-at-gbif.html It can be done, someone could help us? Thanks, Regards -- *Carlos Andrés Beltran *Investigador I2D * Instituto de Investigación de Recursos Biológicos Alexander von Humboldt Avenida Paseo Bolivar 16-20 PBX: (57) 1 320 2767 Ext. 2103 Bogotá, D.C., Colombia* Antes de imprimir este mensaje, piensa si realmente necesitas hacerlo. ¡Gracias!

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