From archilegt at gmail.com  Thu Jun 15 07:21:23 2023
From: archilegt at gmail.com (Myriatrix Admin)
Date: Thu, 15 Jun 2023 09:21:23 +0200
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
Message-ID: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>

Dear colleagues,
As some of you may know, the Natural History Museum of London has decided
to stop supporting the virtual research environment Scratchpads, as the
underlying Drupal 7 is coming to its end of life and the NHM does not have
the resources to migrate Scratchpads to a newer Drupal version.
Since 2019, I have put a lot of effort into the Myriatrix Scratchpad (
https://myriatrix.myspecies.info/), dedicated to the Myriapoda and
Onychophora of the world. I would like to continue maintaining the database
and keeping it accessible online. Would it be possible for the Atlas of
Living Australia / Living Atlases community to support me with converting
Myriatrix into a Living Atlas? I will be happy to contribute back, e. g.,
with updated classifications (taxonomic backbones) for Myriapoda and
Onychophora in the other Living Atlases.
Kind regards,
Carlos

Carlos A. Martínez Muñoz

Myriatrix <http://myriatrix.myspecies.info/>
ResearchGate profile
<https://www.researchgate.net/profile/Carlos_Martinez-Munoz>
Myriapod Morphology and Evolution
<https://www.facebook.com/groups/205802113162102/>
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From trobertson at gbif.org  Thu Jun 15 07:41:47 2023
From: trobertson at gbif.org (Tim Robertson)
Date: Thu, 15 Jun 2023 07:41:47 +0000
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
In-Reply-To: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>
References: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>
Message-ID: <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>

Thanks Carlos,

I suggest we add this to our agenda to discuss in our meeting on Monday.
Markus and I would like to understand your overall data management and we can then explain what tools might be a good fit to explore.

Vicente, we’re meeting at 14:00 Monday – please ping me on slack if you would like to join that.

Thanks,
Tim


From: ALA-Portal <ala-portal-bounces at lists.gbif.org> on behalf of Myriatrix Admin via ALA-Portal <ala-portal at lists.gbif.org>
Date: Thursday, 15 June 2023 at 09.21
To: ala-portal at lists.gbif.org <ala-portal at lists.gbif.org>
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
Dear colleagues,
As some of you may know, the Natural History Museum of London has decided to stop supporting the virtual research environment Scratchpads, as the underlying Drupal 7 is coming to its end of life and the NHM does not have the resources to migrate Scratchpads to a newer Drupal version.
Since 2019, I have put a lot of effort into the Myriatrix Scratchpad (https://myriatrix.myspecies.info/), dedicated to the Myriapoda and Onychophora of the world. I would like to continue maintaining the database and keeping it accessible online. Would it be possible for the Atlas of Living Australia / Living Atlases community to support me with converting Myriatrix into a Living Atlas? I will be happy to contribute back, e. g., with updated classifications (taxonomic backbones) for Myriapoda and Onychophora in the other Living Atlases.
Kind regards,
Carlos

Carlos A. Martínez Muñoz

Myriatrix<http://myriatrix.myspecies.info/>
ResearchGate profile<https://www.researchgate.net/profile/Carlos_Martinez-Munoz>
Myriapod Morphology and Evolution<https://www.facebook.com/groups/205802113162102/>


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From archilegt at gmail.com  Thu Jun 15 09:42:55 2023
From: archilegt at gmail.com (Myriatrix Admin)
Date: Thu, 15 Jun 2023 11:42:55 +0200
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
In-Reply-To: <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>
References: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>
 <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>
Message-ID: <CAPaHoM080dqdc+usdhYV+--V1k6dxxVqgPMh5+YOr9dVhD2+Nw@mail.gmail.com>

Hi Tim,
Good idea! I hope that Vicente will be able to join our meeting!
Cheers,
Carlos

On Thu, Jun 15, 2023 at 9:41 AM Tim Robertson <trobertson at gbif.org> wrote:

> Thanks Carlos,
>
>
>
> I suggest we add this to our agenda to discuss in our meeting on Monday.
>
> Markus and I would like to understand your overall data management and we
> can then explain what tools might be a good fit to explore.
>
>
>
> Vicente, we’re meeting at 14:00 Monday – please ping me on slack if you
> would like to join that.
>
>
>
> Thanks,
>
> Tim
>
>
>
>
>
> *From: *ALA-Portal <ala-portal-bounces at lists.gbif.org> on behalf of
> Myriatrix Admin via ALA-Portal <ala-portal at lists.gbif.org>
> *Date: *Thursday, 15 June 2023 at 09.21
> *To: *ala-portal at lists.gbif.org <ala-portal at lists.gbif.org>
> *Subject: *[ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
>
> Dear colleagues,
>
> As some of you may know, the Natural History Museum of London has decided
> to stop supporting the virtual research environment Scratchpads, as the
> underlying Drupal 7 is coming to its end of life and the NHM does not have
> the resources to migrate Scratchpads to a newer Drupal version.
>
> Since 2019, I have put a lot of effort into the Myriatrix Scratchpad (
> https://myriatrix.myspecies.info/), dedicated to the Myriapoda and
> Onychophora of the world. I would like to continue maintaining the database
> and keeping it accessible online. Would it be possible for the Atlas of
> Living Australia / Living Atlases community to support me with converting
> Myriatrix into a Living Atlas? I will be happy to contribute back, e. g.,
> with updated classifications (taxonomic backbones) for Myriapoda and
> Onychophora in the other Living Atlases.
>
> Kind regards,
>
> Carlos
>
>
>
> Carlos A. Martínez Muñoz
>
>
>
> Myriatrix <http://myriatrix.myspecies.info/>
>
> ResearchGate profile
> <https://www.researchgate.net/profile/Carlos_Martinez-Munoz>
>
> Myriapod Morphology and Evolution
> <https://www.facebook.com/groups/205802113162102/>
>
>
>
>
>
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From David.Martin at csiro.au  Thu Jun 15 10:08:29 2023
From: David.Martin at csiro.au (Martin, Dave (NCMI, Black Mountain))
Date: Thu, 15 Jun 2023 10:08:29 +0000
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
In-Reply-To: <CAPaHoM080dqdc+usdhYV+--V1k6dxxVqgPMh5+YOr9dVhD2+Nw@mail.gmail.com>
References: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>
 <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>
 <CAPaHoM080dqdc+usdhYV+--V1k6dxxVqgPMh5+YOr9dVhD2+Nw@mail.gmail.com>
Message-ID: <MEYPR01MB645610D28F3BD461FD217B0DF95BA@MEYPR01MB6456.ausprd01.prod.outlook.com>

In case it is of use, the tool on ALA/Living Atlas side for scratchpad-like functionality is what we call “Profiles”.

https://profiles.ala.org.au/
https://profiles.ala.org.au/opus/foa/profile/Trichomanes%20caudatum

This allows users to add descriptive information about taxa and is intended to provide some of the tools a taxonomic workbench might consist of. I don’t think any LA instance outside of ALA is using Profiles currently.
It is also worth noting its dependent on a number of other services being setup (occurrences stack, taxon services etc).

Cheers

Dave


From: ALA-Portal <ala-portal-bounces at lists.gbif.org> on behalf of Myriatrix Admin via ALA-Portal <ala-portal at lists.gbif.org>
Date: Thursday, 15 June 2023 at 10:43 am
To: Tim Robertson <trobertson at gbif.org>
Cc: Vicente J. Ruiz Jurado <vjrj at comunes.org>, Markus Döring <mdoering at gbif.org>, ala-portal at lists.gbif.org <ala-portal at lists.gbif.org>
Subject: Re: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
Hi Tim,
Good idea! I hope that Vicente will be able to join our meeting!
Cheers,
Carlos

On Thu, Jun 15, 2023 at 9:41 AM Tim Robertson <trobertson at gbif.org<mailto:trobertson at gbif.org>> wrote:
Thanks Carlos,

I suggest we add this to our agenda to discuss in our meeting on Monday.
Markus and I would like to understand your overall data management and we can then explain what tools might be a good fit to explore.

Vicente, we’re meeting at 14:00 Monday – please ping me on slack if you would like to join that.

Thanks,
Tim


From: ALA-Portal <ala-portal-bounces at lists.gbif.org<mailto:ala-portal-bounces at lists.gbif.org>> on behalf of Myriatrix Admin via ALA-Portal <ala-portal at lists.gbif.org<mailto:ala-portal at lists.gbif.org>>
Date: Thursday, 15 June 2023 at 09.21
To: ala-portal at lists.gbif.org<mailto:ala-portal at lists.gbif.org> <ala-portal at lists.gbif.org<mailto:ala-portal at lists.gbif.org>>
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
Dear colleagues,
As some of you may know, the Natural History Museum of London has decided to stop supporting the virtual research environment Scratchpads, as the underlying Drupal 7 is coming to its end of life and the NHM does not have the resources to migrate Scratchpads to a newer Drupal version.
Since 2019, I have put a lot of effort into the Myriatrix Scratchpad (https://myriatrix.myspecies.info/), dedicated to the Myriapoda and Onychophora of the world. I would like to continue maintaining the database and keeping it accessible online. Would it be possible for the Atlas of Living Australia / Living Atlases community to support me with converting Myriatrix into a Living Atlas? I will be happy to contribute back, e. g., with updated classifications (taxonomic backbones) for Myriapoda and Onychophora in the other Living Atlases.
Kind regards,
Carlos

Carlos A. Martínez Muñoz

Myriatrix<http://myriatrix.myspecies.info/>
ResearchGate profile<https://www.researchgate.net/profile/Carlos_Martinez-Munoz>
Myriapod Morphology and Evolution<https://www.facebook.com/groups/205802113162102/>


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From vjrj at ourproject.org  Thu Jun 15 12:25:55 2023
From: vjrj at ourproject.org (Vicente J. Ruiz Jurado)
Date: Thu, 15 Jun 2023 14:25:55 +0200
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
In-Reply-To: <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>
References: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>
 <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>
Message-ID: <9297aaa4-b56e-6cf5-a16c-a831d93fd99c@ourproject.org>

En 15/6/23 9:41, Tim Robertson via ALA-Portal escribió:
> Thanks Carlos,
> 
> I suggest we add this to our agenda to discuss in our meeting on Monday.
> 
> Markus and I would like to understand your overall data management and 
> we can then explain what tools might be a good fit to explore.
> 
> Vicente, we’re meeting at 14:00 Monday – please ping me on slack if you 
> would like to join that.
> 
> Thanks,
> 
> Tim

I have a medical appointment this Monday, but I think I'll be back at 
that time.

BR,

Vicente



From archilegt at gmail.com  Thu Jun 15 18:30:05 2023
From: archilegt at gmail.com (Myriatrix Admin)
Date: Thu, 15 Jun 2023 20:30:05 +0200
Subject: [ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
In-Reply-To: <MEYPR01MB645610D28F3BD461FD217B0DF95BA@MEYPR01MB6456.ausprd01.prod.outlook.com>
References: <CAPaHoM26qE0q5X9w5G-ko06N3Orbnacifxvau93ov30xxCLx6g@mail.gmail.com>
 <VI1PR09MB2605100F069412C449A80887BE5BA@VI1PR09MB2605.eurprd09.prod.outlook.com>
 <CAPaHoM080dqdc+usdhYV+--V1k6dxxVqgPMh5+YOr9dVhD2+Nw@mail.gmail.com>
 <MEYPR01MB645610D28F3BD461FD217B0DF95BA@MEYPR01MB6456.ausprd01.prod.outlook.com>
Message-ID: <CAPaHoM2De7BYUUtqFa_SjcUjgdSpHf50+cDT6ygnen24Ldcx+g@mail.gmail.com>

Hi Dave,
Yes, it is of use, thanks! I do use the Taxon Description content type in
Myriatrix. A very nice feature in the Scratchpads taxon descriptions is
that if a bibliographic reference is already in the internal database, just
citing its unique number with a so-called "bib tag" or "citekey" will
automatically build that reference and others into a reference list at the
end of each free text field, in a standard format.
See example for *Scolopendra gigantea* Linnaeus, 1758, fields "General
description" and "Distribution":
https://myriatrix.myspecies.info/taxonomy/term/9017/descriptions

Internally, there is no "References" section written. One just writes like
this:
See Kraepelin (1903: 233 <https://www.biodiversitylibrary.org/page/29551367>
)[bib]308[/bib], Attems (1930: 39-40)[bib]303[/bib], Shelley & Kiser (2000:
160-161)[bib]1913[/bib], Shelley (2006: 26)[bib]251[/bib], and Lewis (2016:
24, Table 1)[bib]1229[/bib].
... and the software does the rest.

Cheers,
Carlos

On Thu, Jun 15, 2023 at 12:08 PM Martin, Dave (NCMI, Black Mountain) <
David.Martin at csiro.au> wrote:

> In case it is of use, the tool on ALA/Living Atlas side for
> scratchpad-like functionality is what we call “Profiles”.
>
>
>
> https://profiles.ala.org.au/
>
> https://profiles.ala.org.au/opus/foa/profile/Trichomanes%20caudatum
>
>
>
> This allows users to add descriptive information about taxa and is
> intended to provide some of the tools a taxonomic workbench might consist
> of. I don’t think any LA instance outside of ALA is using Profiles
> currently.
>
> It is also worth noting its dependent on a number of other services being
> setup (occurrences stack, taxon services etc).
>
>
>
> Cheers
>
> Dave
>
>
>
>
>
> *From: *ALA-Portal <ala-portal-bounces at lists.gbif.org> on behalf of
> Myriatrix Admin via ALA-Portal <ala-portal at lists.gbif.org>
> *Date: *Thursday, 15 June 2023 at 10:43 am
> *To: *Tim Robertson <trobertson at gbif.org>
> *Cc: *Vicente J. Ruiz Jurado <vjrj at comunes.org>, Markus Döring <
> mdoering at gbif.org>, ala-portal at lists.gbif.org <ala-portal at lists.gbif.org>
> *Subject: *Re: [ALA-Portal] Myriatrix Scratchpad conversion to Living
> Atlas
>
> Hi Tim,
>
> Good idea! I hope that Vicente will be able to join our meeting!
>
> Cheers,
>
> Carlos
>
>
>
> On Thu, Jun 15, 2023 at 9:41 AM Tim Robertson <trobertson at gbif.org> wrote:
>
> Thanks Carlos,
>
>
>
> I suggest we add this to our agenda to discuss in our meeting on Monday.
>
> Markus and I would like to understand your overall data management and we
> can then explain what tools might be a good fit to explore.
>
>
>
> Vicente, we’re meeting at 14:00 Monday – please ping me on slack if you
> would like to join that.
>
>
>
> Thanks,
>
> Tim
>
>
>
>
>
> *From: *ALA-Portal <ala-portal-bounces at lists.gbif.org> on behalf of
> Myriatrix Admin via ALA-Portal <ala-portal at lists.gbif.org>
> *Date: *Thursday, 15 June 2023 at 09.21
> *To: *ala-portal at lists.gbif.org <ala-portal at lists.gbif.org>
> *Subject: *[ALA-Portal] Myriatrix Scratchpad conversion to Living Atlas
>
> Dear colleagues,
>
> As some of you may know, the Natural History Museum of London has decided
> to stop supporting the virtual research environment Scratchpads, as the
> underlying Drupal 7 is coming to its end of life and the NHM does not have
> the resources to migrate Scratchpads to a newer Drupal version.
>
> Since 2019, I have put a lot of effort into the Myriatrix Scratchpad (
> https://myriatrix.myspecies.info/), dedicated to the Myriapoda and
> Onychophora of the world. I would like to continue maintaining the database
> and keeping it accessible online. Would it be possible for the Atlas of
> Living Australia / Living Atlases community to support me with converting
> Myriatrix into a Living Atlas? I will be happy to contribute back, e. g.,
> with updated classifications (taxonomic backbones) for Myriapoda and
> Onychophora in the other Living Atlases.
>
> Kind regards,
>
> Carlos
>
>
>
> Carlos A. Martínez Muñoz
>
>
>
> Myriatrix <http://myriatrix.myspecies.info/>
>
> ResearchGate profile
> <https://www.researchgate.net/profile/Carlos_Martinez-Munoz>
>
> Myriapod Morphology and Evolution
> <https://www.facebook.com/groups/205802113162102/>
>
>
>
>
>
>
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