- IPT - lists.gbif.org

Re: [IPT] IPT Maven build error
by "Markus Döring (GBIF)" 28 Aug '09

28 Aug '09

Paul, how come you dont have the pom, was it deleted by maven itself? Without the pom maven of course cannot do anything. Ah, I see. You have checked out the entire trunk! We use a subproject layout with parallel projects under trunk. Because Maven and Eclipse are not good buddies we also do not use hierarchical maven projects, but use the <parent> directive to refer to a pom parent. So in order to build the IPT you need to checkout trunk/gbif- providertool like this: cd ~/workspace svn co http://gbif-providertoolkit.googlecode.com/svn/trunk/gbif-providertool ipt this will create an ipt folder in your workspace that contains a pom.xml ! in that ipt dir you should be able to do: mvn eclipse:eclipse Any better? Markus On Aug 28, 2009, at 1:34, Paul J. Morris wrote: > On Thu, 27 Aug 2009 15:05:53 -0700 > Aaron Steele <eightysteele(a)gmail.com> wrote: > >>> That's not working for me, nor is mvn eclipse:eclipse, maven >>> complains that there's no eclipse profile in the one case and no >>> pom.xml file in the other. >> >> If you run 'mvn -Peclipse -X' and post the output that might give us >> some clues. > > It can't find either an eclipse profile or the pom file in the > directory that should end up as the root of the project. > > Effectively this comes from: > mkdir ~/workspace/ipt > cd ~/workspace/ > svn checkout http://gbif-providertoolkit.googlecode.com/svn/trunk/ > ipt/ > cd ipt/ > > though it's gone through a number of updates since then, and has some > local changes to the code (but the same thing happens with a fresh > checkout). > > then: > > mole@chicoreus:~/workspace/ipt$ mvn -Peclipse -X > + Error stacktraces are turned on. > Apache Maven 2.1.0 (r755702; 2009-03-18 15:10:27-0400) > Java version: 1.6.0_06 > Java home: /usr/local/java/jdk1.6.0_06/jre > Default locale: en_US, platform encoding: UTF-8 > OS name: "linux" version: "2.6.18-6-686" arch: "i386" Family: "unix" > [DEBUG] Building Maven user-level plugin registry from: > '/home/mole/.m2/plugin-registry.xml' [DEBUG] Building Maven > global-level plugin registry from: > '/usr/local/java/apache-maven-2.1.0/conf/plugin-registry.xml' [INFO] > Scanning for projects... [WARNING] Profile with id: 'eclipse' has not > been activated. > > [INFO] > ------------------------------------------------------------------------ > [ERROR] BUILD FAILURE [INFO] > ------------------------------------------------------------------------ > [INFO] > > You must specify at least one goal or lifecycle phase to perform build > steps. The following list illustrates some commonly used build > commands: > > mvn clean > Deletes any build output (e.g. class files or JARs). > mvn test > Runs the unit tests for the project. > mvn install > Copies the project artifacts into your local repository. > mvn deploy > Copies the project artifacts into the remote repository. > mvn site > Creates project documentation (e.g. reports or Javadoc). > > Please see > http://maven.apache.org/guides/introduction/introduction-to-the-lifecycle.h… > for a complete description of available lifecycle phases. > > Use "mvn --help" to show general usage information about Maven's > command line. > > > [INFO] > ------------------------------------------------------------------------ > [DEBUG] Trace org.apache.maven.BuildFailureException: > > You must specify at least one goal or lifecycle phase to perform build > steps. The following list illustrates some commonly used build > commands: > > mvn clean > Deletes any build output (e.g. class files or JARs). > mvn test > Runs the unit tests for the project. > mvn install > Copies the project artifacts into your local repository. > mvn deploy > Copies the project artifacts into the remote repository. > mvn site > Creates project documentation (e.g. reports or Javadoc). > > Please see > http://maven.apache.org/guides/introduction/introduction-to-the-lifecycle.h… > for a complete description of available lifecycle phases. > > Use "mvn --help" to show general usage information about Maven's > command line. > > > at > org > .apache > .maven > .lifecycle > .DefaultLifecycleExecutor.execute(DefaultLifecycleExecutor.java:173) > at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:356) at > org.apache.maven.DefaultMaven.execute(DefaultMaven.java:137) at > org.apache.maven.cli.MavenCli.main(MavenCli.java:356) at > sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at > sun > .reflect > .NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) > at > sun > .reflect > .DelegatingMethodAccessorImpl > .invoke(DelegatingMethodAccessorImpl.java:25) > at java.lang.reflect.Method.invoke(Method.java:597) at > org.codehaus.classworlds.Launcher.launchEnhanced(Launcher.java:315) at > org.codehaus.classworlds.Launcher.launch(Launcher.java:255) at > org.codehaus.classworlds.Launcher.mainWithExitCode(Launcher.java:430) > at org.codehaus.classworlds.Launcher.main(Launcher.java:375) [INFO] > ------------------------------------------------------------------------ > [INFO] Total time: < 1 second [INFO] Finished at: Thu Aug 27 19:21:48 > EDT 2009 [INFO] Final Memory: 1M/40M [INFO] > ------------------------------------------------------------------------ > > > Merry Snailing, > -Paul > -- > Paul J. Morris > Biodiversity Informatics Manager > Harvard University Herbaria/Museum of Comparative Zoölogy > mole(a)morris.net AA3SD PGP public key available >

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Re: [IPT] IPT Maven build error
by "Markus Döring (GBIF)" 28 Aug '09

28 Aug '09

Aaron, Paul, the maven eclipse plugin is configurred already in the pom, although in the parent "motherpom" from which the ipt pom inherits: <parent> <groupId>org.gbif</groupId> <artifactId>motherpom</artifactId> <version>1.0-SNAPSHOT</version> </parent> From the motherpom: http://code.google.com/p/gbif-providertoolkit/source/browse/trunk/motherpom… <plugin> <groupId>org.apache.maven.plugins</groupId> <artifactId>maven-eclipse-plugin</artifactId> <configuration> <downloadSources>true</downloadSources> <downloadJavadocs>true</downloadJavadocs> </configuration> </plugin> It seems we desperately need some developer documentation on the wiki for how to setup your dev environment... On Aug 28, 2009, at 6:46, Aaron Steele wrote: >> It can't find either an eclipse profile or the pom file in the >> directory that should end up as the root of the project. > > Try checking out and installing the Maven Eclipse Plugin: > > svn checkout http://svn.apache.org/repos/asf/maven/plugins/tags/maven-eclipse-plugin-2.7 > maven-eclipse-plugin > > Then, in the maven-eclipse-plugin directory, run 'mvn install' and > then retry the IPT mvn command. Success? >

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IPT on linux.
by Tim Noble 17 Aug '09

17 Aug '09

"Haven't been able to get it to work" By which I meant to say that we are unable to import sources. Tim.

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IPT with linux
by Tim Noble 17 Aug '09

17 Aug '09

Just wondering if anybody is running IPT on linux? If so what version? Were there any firewall or other issues? I haven't been able to get it to work on Ubuntu. Tim.

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Workshop to train IPT Helpdesk Experts: 14-16 Sep 2009
by Alberto González-Talaván (GBIF) 23 Jul '09

23 Jul '09

Dear friends of the IPT list, The GBIF Secretariat is organising a practical workshop on the IPT, targeted to those who want to become IPT 'experts' and want to collaborate in a distributed helpdesk system (using tools such as this mailing list). Nominations to participate in the workshop have to be done through a GBIF Participant. If you are interested in participate please contact a relevant GBIF Node Manager or Head of Delegation in order to be nominated. The deadline for nominations is the 13th August 2009. The text of the call is available at http://www.gbif.org/News/NEWS1248337023. You will find the full document of the call attached to this email, including the draft agenda and the pre-inscription form that has to be filled by applicants. I look forward to meeting many of you during the workshop Best regards Alberto ---------- Alberto GONZÁLEZ TALAVÁN Training Officer Global Biodiversity Information Facility Secretariat Universitetsparken 15 DK-2100 Copenhagen, Denmark email: <mailto:atalavan@gbif.org> atalavan(a)gbif.org web: http://www.gbif.org/ T: +45 35 32 14 83 F: +45 35 32 14 80

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Fwd: Instalaci'on de ipt
by Ana Lorenzo 14 Jul '09

14 Jul '09

Perdón olvidé comprimir el archivo catalina.out Estimado Jose, > Le planteo mi problema y adjunto archivo catalina.out que en mi sistema est'a ubicado en la carpeta /usr/share/tomcat5/logs. > > Le doy detalles del entorno: > Sistema operativo: Ubuntu 8.04 > Apache 2.2.8 > Java Se SDK 1.4.2-19 Standard Edition > Tomcat 5.5.27 > > Instalaci'on de IPT: > segu'i las instrucciones del archivo GBIF_IPT_User_Manual_1.0.pdf > IPT qued'o instalado en la carpeta: usr/share/tomcat5/webapps/ipt > > El problema es: desde un browser, al dar http://localhost:8080/ipt da el > mensaje: > HTTP Status 404 - > ------------------------------ > > *type* Status report > > *message* > > *description* *The requested resource () is not available.* > ------------------------------ > Apache Tomcat/6.0.20 > Hice esta prueba: > cree esta la carpeta ana en: usr/share/tomcat5/webapps/ana, con un archivo > index.html > Cuando doy la URL http://localhost:8080/ana, funciona. > > Puede Ud. orientarme qu'e est'a pasando? > Gracias! y saludos. > > Ana Lorenzo > Laboratorio de Inform'atica > Instituto de Bot'anica Darwinion - IBODA > Argentina > >

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Fwd:Instalaci'on de ipt
by "Markus Döring (GBIF)" 14 Jul '09

14 Jul '09

[forwarding on behalf of Ana Lorenzo] [zipped catalina.out attachment as mailing list does not allow > 100kb] From: Ana Lorenzo <analorenzo2004(a)yahoo.com.ar> Date: July 14, 2009 15:43:33 GMT+02:00 To: ipt(a)lists.gbif.org Subject: Instalaci'on de ipt Estimado Jose, Le planteo mi problema y adjunto archivo catalina.out que en mi sistema est'a ubicado en la carpeta /usr/share/tomcat5/logs. Le doy detalles del entorno: Sistema operativo: Ubuntu 8.04 Apache 2.2.8 Java Se SDK 1.4.2-19 Standard Edition Tomcat 5.5.27 Instalaci'on de IPT: segu'i las instrucciones del archivo GBIF_IPT_User_Manual_1.0.pdf IPT qued'o instalado en la carpeta: usr/share/tomcat5/webapps/ipt El problema es: desde un browser, al dar http://localhost:8080/ipt da el mensaje: HTTP Status 404 - type Status report message description The requested resource () is not available. Apache Tomcat/6.0.20 Hice esta prueba: cree esta la carpeta ana en: usr/share/tomcat5/webapps/ana, con un archivo index.html Cuando doy la URL http://localhost:8080/ana, funciona. Puede Ud. orientarme qu'e est'a pasando? Gracias! y saludos. Ana Lorenzo Laboratorio de Inform'atica Instituto de Bot'anica Darwinion - IBODA Argentina

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IPT Short Installation Guide available in French
by Alberto González-Talaván (GBIF) 01 Jul '09

01 Jul '09

Dear friends, Michael Akbaraly from GBIF France has kindly produced a short installation guide in FRENCH for the GBIF IPT in MS Windows environments. The guide is available in PDF format in the download area of the IPT google code site: http://code.google.com/p/gbif-providertoolkit/downloads/list Thank you Michael for preparing this guide! Alberto ---------- Alberto GONZÁLEZ TALAVÁN Training Officer Global Biodiversity Information Facility Secretariat Universitetsparken 15 DK-2100 Copenhagen, Denmark email: <mailto:atalavan@gbif.org> atalavan(a)gbif.org web: http://www.gbif.org/ T: +45 35 32 14 83 F: +45 35 32 14 80

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How to define request with more that one filtering criteria in gbif density data service
by riihi tonttu 26 Jun '09

26 Jun '09

Hi, Sorry if this question is misplaced in this mailing list. If there is a mailing list that is more specifically focussed on the gbif webservices API, I’d be very grateful that you would give me the address of the list ( I’ve looked but haven’t been able to find one). I’d like to know how to define a request with more that one filtering criteria in the gbif density data service. For instance, the following request extracts a kml density file of all occurrences in Canada http://data.gbif.org/ws/rest/density/list?originisocountrycode=CA&format=kml However if I add the constraint that the occurrences come from the OBIS network: http://data.gbif.org/ws/rest/density/list?resourcenetworkkey=3&originisocou… only one constraint is taken into account (resourcenetworkkey), the originisocountrycode is disregarded. Is there any way of combining several filters in a density request? Thanks very much. saikari

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requesting a feature for posting elements written in regional language
by Burke Chih-Jen Ko 22 Jun '09

22 Jun '09

Hi Tim, Following what I briefly mentioned in the e-Biosphere, here I describe it to hopefully make it more comprehensive. Now we TaiBIF are doing data cleaning against our specimen data, one of the tasks is to separate information written in different languages. Take 'Locality' as an example, if an attribute is 'Taipei 台北', we move '台北' to a separate column named 'LocalityInChinese'. (Considering easiness for data providers, we decided to use 'InChinese' instead of 'zh_TW'.) Then you see several descriptive elements in Darwin Core could have their counterparts in Chinese, like Collector, Identifier, and many others. To be used by regional data providers, IPT will be even better if it can handle multiple languages. Actually we had thought about just keep all languages in one place, but I am afraid that it might create problems when information is exchanging worldwide. As I am aware that language issues could lead to further discussions of the standard, I, therefore, propose a neutral mechanism that users can add their own elements, so that once an element is created, it can automatically map to the column with the same name, when a SQL source is connected or a csv sheet is uploaded. There should also be statistics based on the new element, or users can decide they don't want it calculated. In this case, I would add 'LocalityInChinese' as the new element. Hope this make sense. Cheers, Chih-Jen(Burke)

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