[API-users] API for batch calling GBIF id -> checklist ID
mdoering at gbif.org
Wed Feb 22 12:14:55 CET 2017
the way you describe is the current way to go.
IPNI unfortunately has 2 problems you should be aware of. The dataset in GBIF is a somewhat outdated and has not been updated since 2009. We are working with Kew to publish a new version for a long time, but things progress very slowly.
The other issue is that IPNI really is 3 datasets combined all of which can cover the same name. You should therefore be prepared to find multiple ids for the same name - even on their current website. See http://www.ipni.org/about_the_index.html
For example Avena sativa gives 3 hits from IK, GCI & APNI: http://www.ipni.org/ipni/simplePlantNameSearch.do?find_wholeName=Avena+sativa&output_format=normal&query_type=by_query&back_page=query_ipni.html
In the future we would like to add a scientificNameID property to the GBIF backbone taxa and populate that with IPNI, IF or ZooBank ids. But that is not available so far.
On 22 Feb 2017, at 12:03, Yan Wong <yan at pixie.org.uk<mailto:yan at pixie.org.uk>> wrote:
I have a large number of GBIF ids (~ 2 million), for which I wish to know any existing International Plant Names Index IDs (IPNI s). What’s the easiest way to do this? I can use the standard API, e.g.
for 2705290 = Avena sativa, which gives me an output that contains several IPNIs (in this case, 164949-3, 391732-1, 27200-2, of which the number 391732-1 seems to be the canonical one, although I can’t figure out how to identify it as such from the GBIF API output)
It will obviously be tedious (and unwarranted) to make 2 million API calls. What’s the recommended way to do this?
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