[Ala-portal] Showing uploaded DwC-A on the map

Burke Chih-Jen Ko [GBIF] bko at gbif.org
Tue Jun 10 14:37:42 CEST 2014 

Thanks Dave - it should be that for the last test in order to get the latest biocache-store I went straight to Ansible provisioning without destroying the vagrant box. After I start again after $ vagrant destroy I have 1) the solr working again; 2) the number of records correctly indexed; 3) and the map centred automatically.

Great!

Burke


On Jun 10, 2014, at 1:03 PM, <David.Martin at csiro.au> wrote:

> Thanks Burke.
> No. It looks like the installation of SOLR has failed somehow.
> You should be able to see the SOLR admin console on http://10.1.1.2/solr 
> 
> Dave
> ________________________________________
> From: ala-portal-bounces at lists.gbif.org [ala-portal-bounces at lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko at gbif.org]
> Sent: 10 June 2014 20:12
> To: Martin, Dave (CES, Black Mountain)
> Cc: Ala-portal at lists.gbif.org
> Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
> 
> Hi Dave,
> 
> With this update and the same sample DwC-A the " biocache> ingest dr0" produces the following error:
> 
> org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error
>        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385)
>        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180)
>        at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90)
>        at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301)
>        at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548)
>        at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142)
>        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97)
>        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89)
>        at scala.collection.immutable.List.foreach(List.scala:318)
>        at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89)
>        at au.org.ala.biocache.load.Loader.load(Loader.scala:75)
>        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59)
>        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58)
>        at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
>        at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
>        at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58)
>        at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22)
>        at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)
> org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error
>        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385)
>        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180)
>        at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90)
>        at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301)
>        at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548)
>        at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142)
>        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97)
>        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89)
>        at scala.collection.immutable.List.foreach(List.scala:318)
>        at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89)
>        at au.org.ala.biocache.load.Loader.load(Loader.scala:75)
>        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59)
>        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58)
>        at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
>        at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
>        at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58)
>        at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22)
>        at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)
> 
> Does it look relevant to the latest version of biocache-store-1.1.1?
> 
> Thanks,
> 
> Burke
> 
> 
> On Jun 10, 2014, at 9:29 AM, david.martin at csiro.au wrote:
> 
>> Thanks Burke.
>> 
>> The biocache-store-1.1.1 release should get around this problem. The ansible scripts are now pointing to 1.1.1 as of this (australian) morning [1].
>> 
>> Dave
>> [1] https://github.com/gbif/ala-install/commit/d67439e8b4226987d13ccd53396826e576ce0414
>> ________________________________________
>> From: Burke Chih-Jen Ko [GBIF] [bko at gbif.org]
>> Sent: 09 June 2014 23:39
>> To: Martin, Dave (CES, Black Mountain)
>> Cc: Ala-portal at lists.gbif.org
>> Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
>> 
>> Thanks Dave - I can confirm that the mapping seems to work now.[1]
>> 
>> Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
>> 
>> Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
>> 
>> It’s very nice to see charts and a map after only a few steps!
>> 
>> Cheers,
>> 
>> Burke
>> 
>> [1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
>> 
>> On 07 Jun 2014, at 16:31, David.Martin at csiro.au wrote:
>> 
>>> Hi Burke,
>>> 
>>> This problem should now be fixed. See [1]
>>> We've done a minor update of the biocache-store and the collectory and theres an update to an external config file.
>>> These updates are picked up if you use the latest ansible scripts.
>>> 
>>> Cheers
>>> 
>>> Dave
>>> [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:dr230
>>> ________________________________________
>>> From: ala-portal-bounces at lists.gbif.org [ala-portal-bounces at lists.gbif.org] on behalf of David.Martin at csiro.au [David.Martin at csiro.au]
>>> Sent: 07 June 2014 09:11
>>> To: bko at gbif.org; Ala-portal at lists.gbif.org
>>> Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
>>> 
>>> Thanks Burke.
>>> I've reproduced the problem.
>>> It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
>>> 
>>> Dave
>>> ________________________________________
>>> From: ala-portal-bounces at lists.gbif.org [ala-portal-bounces at lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko at gbif.org]
>>> Sent: 07 June 2014 00:47
>>> To: ala-portal at lists.gbif.org
>>> Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
>>> 
>>> But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map.
>>> Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
>>> 
>>> Cheers,
>>> 
>>> Burke
>>> 
>>> On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" <bko at gbif.org> wrote:
>>> 
>>>> Thanks Santiago - hum I have the impression but I must have missed that.
>>>> I'll ensure the issue is logged.
>>>> 
>>>> Burke
>>>> 
>>>> On Jun 6, 2014, at 2:53 PM, Santiago <sama at gbif.es> wrote:
>>>> 
>>>>> If you see the image of your map, you can see that the plus button is
>>>>> deactivated, because you have the maximum zoom, this is a bug, I think. I
>>>>> reported this problem through this list.
>>>>> 
>>>>> You only have to click on the less button and you will see your occurrences.
>>>>> 
>>>>> Kind regards.
>>>>> SaMa.
>>>>> 
>>>>> -----Mensaje original-----
>>>>> De: ala-portal-bounces at lists.gbif.org
>>>>> [mailto:ala-portal-bounces at lists.gbif.org] En nombre de Burke Chih-Jen Ko
>>>>> [GBIF]
>>>>> Enviado el: viernes, 06 de junio de 2014 14:46
>>>>> Para: <ala-portal at lists.gbif.org>
>>>>> Asunto: [Ala-portal] Showing uploaded DwC-A on the map
>>>>> 
>>>>> Hi all,
>>>>> 
>>>>> I am currently writing steps to create an example data resource and to see
>>>>> them indexed and shown on the map. The DRAFT guide so far being:
>>>>> http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
>>>>> 
>>>>> As I finished the steps, by clicking the "view records", I couldn't find
>>>>> ways to see records and the map tiles. It seems no documentation about
>>>>> configuring this part yet, or is there anything I missed?
>>>>> 
>>>>> A screenshot attached:
>>>>> https://dl.dropboxusercontent.com/u/66568061/mapping.png.
>>>>> 
>>>>> Thanks in advance for hinting,
>>>>> 
>>>>> Burke
>>>>> _______________________________________________
>>>>> Ala-portal mailing list
>>>>> Ala-portal at lists.gbif.org
>>>>> http://lists.gbif.org/mailman/listinfo/ala-portal
>>>>> 
>>>>> 
>>>> 
>>>> _______________________________________________
>>>> Ala-portal mailing list
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>>>> http://lists.gbif.org/mailman/listinfo/ala-portal
>>>> 
>>> 
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>> 
>> 
> 
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