[Ala-portal] Showing uploaded DwC-A on the map

David.Martin at csiro.au David.Martin at csiro.au
Tue Jun 10 13:03:13 CEST 2014 

Thanks Burke.
No. It looks like the installation of SOLR has failed somehow.
You should be able to see the SOLR admin console on http://10.1.1.2/solr 

Dave
________________________________________
From: ala-portal-bounces at lists.gbif.org [ala-portal-bounces at lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko at gbif.org]
Sent: 10 June 2014 20:12
To: Martin, Dave (CES, Black Mountain)
Cc: Ala-portal at lists.gbif.org
Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map

Hi Dave,

With this update and the same sample DwC-A the " biocache> ingest dr0" produces the following error:

org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error
        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385)
        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180)
        at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90)
        at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301)
        at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548)
        at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142)
        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97)
        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89)
        at scala.collection.immutable.List.foreach(List.scala:318)
        at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89)
        at au.org.ala.biocache.load.Loader.load(Loader.scala:75)
        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59)
        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58)
        at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
        at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
        at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58)
        at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22)
        at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)
org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error
        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385)
        at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180)
        at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90)
        at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301)
        at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548)
        at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142)
        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97)
        at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89)
        at scala.collection.immutable.List.foreach(List.scala:318)
        at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89)
        at au.org.ala.biocache.load.Loader.load(Loader.scala:75)
        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59)
        at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58)
        at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33)
        at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108)
        at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58)
        at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22)
        at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)

Does it look relevant to the latest version of biocache-store-1.1.1?

Thanks,

Burke


On Jun 10, 2014, at 9:29 AM, david.martin at csiro.au wrote:

> Thanks Burke.
>
> The biocache-store-1.1.1 release should get around this problem. The ansible scripts are now pointing to 1.1.1 as of this (australian) morning [1].
>
> Dave
> [1] https://github.com/gbif/ala-install/commit/d67439e8b4226987d13ccd53396826e576ce0414
> ________________________________________
> From: Burke Chih-Jen Ko [GBIF] [bko at gbif.org]
> Sent: 09 June 2014 23:39
> To: Martin, Dave (CES, Black Mountain)
> Cc: Ala-portal at lists.gbif.org
> Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
>
> Thanks Dave - I can confirm that the mapping seems to work now.[1]
>
> Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
>
> Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
>
> It’s very nice to see charts and a map after only a few steps!
>
> Cheers,
>
> Burke
>
> [1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
>
> On 07 Jun 2014, at 16:31, David.Martin at csiro.au wrote:
>
>> Hi Burke,
>>
>> This problem should now be fixed. See [1]
>> We've done a minor update of the biocache-store and the collectory and theres an update to an external config file.
>> These updates are picked up if you use the latest ansible scripts.
>>
>> Cheers
>>
>> Dave
>> [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:dr230
>> ________________________________________
>> From: ala-portal-bounces at lists.gbif.org [ala-portal-bounces at lists.gbif.org] on behalf of David.Martin at csiro.au [David.Martin at csiro.au]
>> Sent: 07 June 2014 09:11
>> To: bko at gbif.org; Ala-portal at lists.gbif.org
>> Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
>>
>> Thanks Burke.
>> I've reproduced the problem.
>> It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
>>
>> Dave
>> ________________________________________
>> From: ala-portal-bounces at lists.gbif.org [ala-portal-bounces at lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko at gbif.org]
>> Sent: 07 June 2014 00:47
>> To: ala-portal at lists.gbif.org
>> Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
>>
>> But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map.
>> Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
>>
>> Cheers,
>>
>> Burke
>>
>> On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" <bko at gbif.org> wrote:
>>
>>> Thanks Santiago - hum I have the impression but I must have missed that.
>>> I'll ensure the issue is logged.
>>>
>>> Burke
>>>
>>> On Jun 6, 2014, at 2:53 PM, Santiago <sama at gbif.es> wrote:
>>>
>>>> If you see the image of your map, you can see that the plus button is
>>>> deactivated, because you have the maximum zoom, this is a bug, I think. I
>>>> reported this problem through this list.
>>>>
>>>> You only have to click on the less button and you will see your occurrences.
>>>>
>>>> Kind regards.
>>>> SaMa.
>>>>
>>>> -----Mensaje original-----
>>>> De: ala-portal-bounces at lists.gbif.org
>>>> [mailto:ala-portal-bounces at lists.gbif.org] En nombre de Burke Chih-Jen Ko
>>>> [GBIF]
>>>> Enviado el: viernes, 06 de junio de 2014 14:46
>>>> Para: <ala-portal at lists.gbif.org>
>>>> Asunto: [Ala-portal] Showing uploaded DwC-A on the map
>>>>
>>>> Hi all,
>>>>
>>>> I am currently writing steps to create an example data resource and to see
>>>> them indexed and shown on the map. The DRAFT guide so far being:
>>>> http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
>>>>
>>>> As I finished the steps, by clicking the "view records", I couldn't find
>>>> ways to see records and the map tiles. It seems no documentation about
>>>> configuring this part yet, or is there anything I missed?
>>>>
>>>> A screenshot attached:
>>>> https://dl.dropboxusercontent.com/u/66568061/mapping.png.
>>>>
>>>> Thanks in advance for hinting,
>>>>
>>>> Burke
>>>> _______________________________________________
>>>> Ala-portal mailing list
>>>> Ala-portal at lists.gbif.org
>>>> http://lists.gbif.org/mailman/listinfo/ala-portal
>>>>
>>>>
>>>
>>> _______________________________________________
>>> Ala-portal mailing list
>>> Ala-portal at lists.gbif.org
>>> http://lists.gbif.org/mailman/listinfo/ala-portal
>>>
>>
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>
>

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