Hi everyone,

I also insist with this question form Laura, is there any tutorial to migrate from 1.0.RC1 or RC2 to the new one ? How about the hb2 database and the data folder ? Please, can someone answer to my quiestion ! My DataSet is alredy published , registered, what is the next step to get it from http://data.gbif.org ? Even my data provider is not yet listed there. I heard that the gbif node manager needs to confirm the dataset, what is the email adress for Madagascar, may be this is one of the problem. My URL : http://wcsmad.org:8080/ipt the Dataset is Makira

Thanks

Andry Rakotomanjaka Technical Manager Madagascar Biodiverity Network http://data.rebioma.net

----- Original Message ----- From: "Russell, Laura" larussell@ku.edu To: "Aaron Steele" eightysteele@gmail.com; ipt@lists.gbif.org Cc: "gbif-ipt-contributors" gbif-ipt-contributors@googlegroups.com Sent: Monday, January 25, 2010 7:46 PM Subject: Re: [IPT] New IPT release (RC3) now available for download

What is best practice for installing the new war file if you have a previous version in place? I didn't see anything on the wiki. In my past experience working with Tomcat, we would stop the service, archive the old war file, delete the application folders out of webapps and out of Catalina work folders, place the new war and then restart Tomcat. Is all of that necessary or can we just put the new war in place and restart Tomcat? If users have not moved their data folder to another location what cautions do we need to provide? Thanks.

Laura Russell VertNet Programmer Biodiversity Institute University of Kansas Dyche Hall 1345 Jayhawk Blvd., Room 606 Lawrence, KS 66045

Phone: 785.864.4681 Fax: 785.864.5335 Email: larussell@ku.edu URL: http://www.vertnet.org

VertNet Portals: MaNIS: http://www.manisnet.org HerpNET: http://www.herpnet.org ORNIS: http://www.ornisnet.org FishNet2: http://www.fishnet2.net

-----Original Message----- From: ipt-bounces@lists.gbif.org [mailto:ipt-bounces@lists.gbif.org] On Behalf Of Aaron Steele Sent: Wednesday, January 13, 2010 12:42 PM To: ipt@lists.gbif.org Cc: gbif-ipt-contributors Subject: [IPT] New IPT release (RC3) now available for download

The latest IPT release (RC3) is now available for download and testing!

http://gbif-providertoolkit.googlecode.com/files/ipt-1.0-RC3.war

This release depends on the updated GeoServer IPT plugin which is bundled here: http://gbif-providertoolkit.googlecode.com/files/ipt-geoserver-1.0-RC3.z ip

New features include internationalization support, Darwin Core updates that reflect the latest ratified standard, and several bug fixes.

Note that we are still unable to reproduce the delete bug (http://code.google.com/p/gbif-providertoolkit/issues/detail?id=155) and we are actively looking for testers who can reproduce this issue (or discover new issues) before the IPT version 1 release.

As always, please submit issues here: http://code.google.com/p/gbif-providertoolkit/issues/entry

Thanks! The GBIF IPT Team _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt

Thanks Dag,

I would just like to mention in addition that there will be a next release (mainly bug fix) of the IPT in the coming days / week. It might be worth considering delaying migration until next week.

Best wishes, Tim

On Feb 3, 2010, at 10:33 AM, Dag Terje Filip Endresen wrote:

Dear Andry and Laura,

To keep your configuration and added datasets between upgrade of IPT version, you may copy the data folder. Even better is to keep the data folder outside of the tomcat webapps folders.

1. Locate your data folder at webapps/ipt/data
2. Copy this folder somewhere
3. Stop tomcat
4. Delete the webapps/ipt folder (or use the Tomcat manager to

undeploy ipt) 5. Rename the new IPT war file for example as ipt.war (new version downloaded from IPT site) 6. Copy this ipt.war to the webapps folder (or use the Tomcat manager to deploy ipt.war) 7. Start Tomcat 8. Stop Tomcat 9. Copy the saved copy of your data directory back to overwrite the data directory of the new upgraded ipt (webapps/ipt/data) 10. Start Tomcat

Much more advised would however be to keep your data directory outside the webapps folders. You may copy the saved ipt data folder (webapps/ipt/data) to a permanent location outside the webapps folders. As an example I keep mine at /usr/local/ipt_data/data. Each time you upgrade the IPT you will need to update the ipt.properties configuration file. This file is located at webapps/ipt/WEB-INF/ classes/ipt.properties.

Add the following line to ipt.properties: dataDir=/usr/local/ipt_data/data

At least this works all fine for me. I hope this is of any help.

I believe that the IPT development team are working on improved upgrade routines for the scheduled upcoming releases during this spring.

Best regards Dag

From: RAKOTOMANJAKA Andry Jean Marc [mailto:ajmrakotomanjaka@gmail.com] To: Russell, Laura [mailto:larussell@ku.edu], Aaron Steele [mailto:eightysteele@gmail.com ], ipt@lists.gbif.org Cc: gbif-ipt-contributors [mailto:gbif-ipt-contributors@googlegroups.com ] Sent: Wed, 03 Feb 2010 09:37:24 +0100 Subject: Re: [IPT] New IPT release (RC3) now available for download

Hi everyone,

I also insist with this question form Laura, is there any tutorial to migrate from 1.0.RC1 or RC2 to the new one ? How about the hb2 database and the data folder ? Please, can someone answer to my quiestion ! My DataSet is alredy published , registered, what is the next step to get it from http://data.gbif.org ? Even my data provider is not yet listed there. I heard that the gbif node manager needs to confirm the dataset, what is the email adress for Madagascar, may be this is one of the problem. My URL : http://wcsmad.org:8080/ipt the Dataset is Makira

Thanks

Andry Rakotomanjaka Technical Manager Madagascar Biodiverity Network http://data.rebioma.net

----- Original Message ----- From: "Russell, Laura" larussell@ku.edu To: "Aaron Steele" eightysteele@gmail.com; ipt@lists.gbif.org Cc: "gbif-ipt-contributors" gbif-ipt-contributors@googlegroups.com Sent: Monday, January 25, 2010 7:46 PM Subject: Re: [IPT] New IPT release (RC3) now available for download

...

What is best practice for installing the new war file if you have a previous version in place? I didn't see anything on the wiki. In my past experience working with Tomcat, we would stop the service,

archive

...

the old war file, delete the application folders out of webapps

and out

...

of Catalina work folders, place the new war and then restart

Tomcat. Is

...

all of that necessary or can we just put the new war in place and restart Tomcat? If users have not moved their data folder to another location what cautions do we need to provide? Thanks.

Laura Russell VertNet Programmer Biodiversity Institute University of Kansas Dyche Hall 1345 Jayhawk Blvd., Room 606 Lawrence, KS 66045

Phone: 785.864.4681 Fax: 785.864.5335 Email: larussell@ku.edu URL: http://www.vertnet.org

VertNet Portals: MaNIS: http://www.manisnet.org HerpNET: http://www.herpnet.org ORNIS: http://www.ornisnet.org FishNet2: http://www.fishnet2.net

-----Original Message----- From: ipt-bounces@lists.gbif.org [mailto:ipt-

bounces@lists.gbif.org] On

...

Behalf Of Aaron Steele Sent: Wednesday, January 13, 2010 12:42 PM To: ipt@lists.gbif.org Cc: gbif-ipt-contributors Subject: [IPT] New IPT release (RC3) now available for download

The latest IPT release (RC3) is now available for download and

testing!

...

http://gbif-providertoolkit.googlecode.com/files/ipt-1.0-RC3.war

This release depends on the updated GeoServer IPT plugin which is bundled here: http://gbif-providertoolkit.googlecode.com/files/ipt-geoserver-1.0-RC3.z ip

New features include internationalization support, Darwin Core

updates

...

that reflect the latest ratified standard, and several bug fixes.

Note that we are still unable to reproduce the delete bug (http://code.google.com/p/gbif-providertoolkit/issues/detail?id=155) and we are actively looking for testers who can reproduce this

issue (or

...

discover new issues) before the IPT version 1 release.

As always, please submit issues here: http://code.google.com/p/gbif-providertoolkit/issues/entry

Thanks! The GBIF IPT Team _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt

---

IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt

I'd like to know what version the IPT is using and where can we see the list of fields ?

The IPT uses the ratified version of Simple Darwin Core: http://goo.gl/ARpk

The relevant source code is DarwinCore.java: http://goo.gl/kb5c

Finally, where we can find these new extension like the Multimedia or the Dublincore one ?

John?

On Thu, Feb 11, 2010 at 4:30 AM, RAKOTOMANJAKA Andry Jean Marc ajmrakotomanjaka@gmail.com wrote:

Dear all,

I'd like to know what version the IPT is using and where can we see the list of fields ? If I consider the DarwinCore 1.4 standard with curatorial and geospatial extension, the IPT will map automatically 64 fields instead of 57 (fields without modification). Darwin Core 14 Element Recommended Term HigherTaxon higherClassification EarliestDateCollected eventDate LatestDateCollected eventDate VerbatimCollectingDate verbatimEventDate Collector recordedBy CatalogNumberNumeric catalogNumber CollectorNumber recordNumber

If we took the final version here http://rs.tdwg.org/dwc/2009-09-23/terms/index.htm, theses 36 fields are not considered. In the history, some of them were created in 2008.

IPT.Term name IPT.Class AcceptedTaxon Taxon Binomial Taxon HigherTaxonID Taxon HigherTaxon Taxon AcceptedTaxonID Taxon BasionymID Taxon Basionym Taxon TaxonAccordingTo Taxon SamplingLocationID SamplingLocation DistanceAboveSurfaceInMetersMinimum SamplingLocation DistanceAboveSurfaceInMetersMaximum SamplingLocation SamplingLocationRemarks SamplingLocation SamplingEventID SamplingEvent StartTimeOfDay SamplingEvent EndTimeOfDay SamplingEvent YearSampled SamplingEvent MonthOfYear SamplingEvent DayOfMonth SamplingEvent Collector SamplingEvent CollectorNumber SamplingEvent SamplingEventAttributes SamplingEvent SamplingEventRemarks SamplingEvent LatestDateCollected SamplingEvent EarliestDateCollected SamplingEvent VerbatimCollectingDate SamplingEvent AccessConstraints Sample Generalizations Sample SampleDetails Sample SampleRemarks Sample CatalogNumberNumeric Sample Citation Sample SampleAttributes Sample AssociatedSamples Sample Language DublinCore RightsHolder DublinCore Rights DublinCore

Finally, where we can find these new extension like the Multimedia or the Dublincore one ?

Best regards

Andry

__________ Information from ESET NOD32 Antivirus, version of virus signature database 4854 (20100210) __________

The message was checked by ESET NOD32 Antivirus.

http://www.eset.com

---

IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt

Dear Andry,

Thank you for checking up on the registration. I am sorry that it takes so long for Makira to be fully registered. We indeed have not yet received the endorsement of the Node Manager (Dr. Jaona Ranaivo, ranaivo_jaona@yahoo.fr), so that the dataset is registered, but not yet released for indexing. I will follow up with them, and keep you updated on the progress.

With best regards, Andrea

--------------------------------------------------------------- Andrea Hahn (ahahn@gbif.org) Data Portal Manager Global Biodiversity Information Facility Secretariat Universitetsparken 15, DK-2100 Copenhagen, Denmark Tel: +45-35321491 Fax: +45-35321480 URL: http://www.gbif.org ---------------------------------------------------------------

-----Original Message----- From: ipt-bounces@lists.gbif.org [mailto:ipt-bounces@lists.gbif.org] On Behalf Of RAKOTOMANJAKA Andry Jean Marc Sent: Wednesday, February 03, 2010 9:37 AM To: Russell, Laura; Aaron Steele; ipt@lists.gbif.org Cc: gbif-ipt-contributors Subject: Re: [IPT] New IPT release (RC3) now available for download

Hi everyone,

I also insist with this question form Laura, is there any tutorial to migrate from 1.0.RC1 or RC2 to the new one ? How about the hb2 database and the data folder ? Please, can someone answer to my quiestion ! My DataSet is alredy published , registered, what is the next step to get it from http://data.gbif.org ? Even my data provider is not yet listed there. I heard that the gbif node manager needs to confirm the dataset, what is the email adress for Madagascar, may be this is one of the problem. My URL : http://wcsmad.org:8080/ipt the Dataset is Makira

Thanks

Andry Rakotomanjaka Technical Manager Madagascar Biodiverity Network http://data.rebioma.net

----- Original Message ----- From: "Russell, Laura" larussell@ku.edu To: "Aaron Steele" eightysteele@gmail.com; ipt@lists.gbif.org Cc: "gbif-ipt-contributors" gbif-ipt-contributors@googlegroups.com Sent: Monday, January 25, 2010 7:46 PM Subject: Re: [IPT] New IPT release (RC3) now available for download

What is best practice for installing the new war file if you have a previous version in place? I didn't see anything on the wiki. In my past experience working with Tomcat, we would stop the service, archive the old war file, delete the application folders out of webapps and out of Catalina work folders, place the new war and then restart Tomcat. Is all of that necessary or can we just put the new war in place and restart Tomcat? If users have not moved their data folder to another location what cautions do we need to provide? Thanks.

Laura Russell VertNet Programmer Biodiversity Institute University of Kansas Dyche Hall 1345 Jayhawk Blvd., Room 606 Lawrence, KS 66045

Phone: 785.864.4681 Fax: 785.864.5335 Email: larussell@ku.edu URL: http://www.vertnet.org

VertNet Portals: MaNIS: http://www.manisnet.org HerpNET: http://www.herpnet.org ORNIS: http://www.ornisnet.org FishNet2: http://www.fishnet2.net

-----Original Message----- From: ipt-bounces@lists.gbif.org [mailto:ipt-bounces@lists.gbif.org] On Behalf Of Aaron Steele Sent: Wednesday, January 13, 2010 12:42 PM To: ipt@lists.gbif.org Cc: gbif-ipt-contributors Subject: [IPT] New IPT release (RC3) now available for download

The latest IPT release (RC3) is now available for download and testing!

http://gbif-providertoolkit.googlecode.com/files/ipt-1.0-RC3.war

This release depends on the updated GeoServer IPT plugin which is bundled here: http://gbif-providertoolkit.googlecode.com/files/ipt-geoserver-1.0-RC3.z ip

New features include internationalization support, Darwin Core updates that reflect the latest ratified standard, and several bug fixes.

Note that we are still unable to reproduce the delete bug (http://code.google.com/p/gbif-providertoolkit/issues/detail?id=155) and we are actively looking for testers who can reproduce this issue (or discover new issues) before the IPT version 1 release.

As always, please submit issues here: http://code.google.com/p/gbif-providertoolkit/issues/entry

Thanks! The GBIF IPT Team _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt _______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt

_______________________________________________ IPT mailing list IPT@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ipt