[IPT] Data resource publishing problems. (Oracle database)

Aurelio Sanabria asanabria at inbio.ac.cr
Tue Feb 1 16:20:16 CET 2011


Hello there,

I'm trying to install the IPT RC3 acording to the instruction on the
web page of the project  and everything goes well until I try to
publish the resource.

It return the next error: (see attachment screenshot.1.png)
-------------------------------------------------------------------------------------------------------------------
Feb 1, 2011 8:55:38 AM

Failed. Fatal error!

Continue to resource overview.

Log Messages
Archive generation started for resource cr-inbio 8:55:38 AM
Start writing data file for Darwin Core Occurrence 8:55:38 AM

Exception
org.gbif.ipt.task.GenerateDwca.dumpData(GenerateDwca.java:423)
org.gbif.ipt.task.GenerateDwca.addDataFile(GenerateDwca.java:140)
org.gbif.ipt.task.GenerateDwca.createDataFiles(GenerateDwca.java:260)
org.gbif.ipt.task.GenerateDwca.call(GenerateDwca.java:205)
org.gbif.ipt.task.GenerateDwca.call(GenerateDwca.java:37)
java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
java.util.concurrent.FutureTask.run(FutureTask.java:138)
java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
java.lang.Thread.run(Thread.java:619)
-------------------------------------------------------------------------------------------------------------------

If I check the errors it shows this:

-------------------------------------------------------------------------------------------------------------------
ERROR 01-Feb-2011 08:51:46 java.sql.SQLException: Invalid argument(s)
in call: setFetchSize
ERROR 01-Feb-2011 08:51:46 Fatal DwC-A Generator Error
org.gbif.ipt.service.SourceException: Cant build iterator for source
biodiversidaddecostarica :Invalid argument(s) in call: setFetchSize
	at org.gbif.ipt.service.manage.impl.SourceManagerImpl.rowIterator(SourceManagerImpl.java:572)
	at org.gbif.ipt.task.GenerateDwca.dumpData(GenerateDwca.java:346)
	at org.gbif.ipt.task.GenerateDwca.addDataFile(GenerateDwca.java:140)
	at org.gbif.ipt.task.GenerateDwca.createDataFiles(GenerateDwca.java:260)
	at org.gbif.ipt.task.GenerateDwca.call(GenerateDwca.java:205)
	at org.gbif.ipt.task.GenerateDwca.call(GenerateDwca.java:37)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:619)
ERROR 01-Feb-2011 08:51:46 Process for resource cr-inbio aborted due
to error: org.gbif.ipt.task.GeneratorException:
java.lang.NullPointerException
ERROR 01-Feb-2011 08:55:38 java.sql.SQLException: Invalid argument(s)
in call: setFetchSize
ERROR 01-Feb-2011 08:55:38 Fatal DwC-A Generator Error
org.gbif.ipt.service.SourceException: Cant build iterator for source
biodiversidaddecostarica :Invalid argument(s) in call: setFetchSize
	at org.gbif.ipt.service.manage.impl.SourceManagerImpl.rowIterator(SourceManagerImpl.java:572)
	at org.gbif.ipt.task.GenerateDwca.dumpData(GenerateDwca.java:346)
	at org.gbif.ipt.task.GenerateDwca.addDataFile(GenerateDwca.java:140)
	at org.gbif.ipt.task.GenerateDwca.createDataFiles(GenerateDwca.java:260)
	at org.gbif.ipt.task.GenerateDwca.call(GenerateDwca.java:205)
	at org.gbif.ipt.task.GenerateDwca.call(GenerateDwca.java:37)
	at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
	at java.util.concurrent.FutureTask.run(FutureTask.java:138)
	at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
	at java.lang.Thread.run(Thread.java:619)
ERROR 01-Feb-2011 08:55:38 Process for resource cr-inbio aborted due
to error: org.gbif.ipt.task.GeneratorException:
java.lang.NullPointerException
-------------------------------------------------------------------------------------------------------------------

I have been searching if its a problem in my database (by the way its
an oracle 9i) and found this[0]

The question is, is there a way to bypass this problem?

should I add this as a bug? in the project site?


[0] http://opensource.atlassian.com/projects/hibernate/browse/HHH-682

--
Saludos,
Aurelio Sanabria
http://informatics.inbio.ac.cr/


More information about the IPT mailing list