Dear all,
The following dataset is failing to register with GBIF, on publish:
http://ipt.gbif.pt/ipt/resource?r=stph
The publisher is https://www.gbif.org/publisher/4c5bf646-457d-431d-b055-6c27f468ff0a, which is already associated to our IPT. I checked the DwC-A, and everything seems normal
The publication log is the following:
Archive generation started for version #1.4 Start writing data file for Darwin Core Occurrence No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines with fewer columns than mapped for mapping Darwin Core Occurrence in source stph_gbif All lines match the filter criteria for mapping Darwin Core Occurrence in source stph_gbif Data file written for Darwin Core Occurrence with 404 records and 34 columns All data files completed EML file added meta.xml archive descriptor written Validating the core file: occurrence.txt. Depending on the number of records, this can take a while. ? Validating the core basisOfRecord is always present and its value matches the Darwin Core Type Vocabulary. ? Validating the core ID field occurrenceID is always present and unique. No lines are missing occurrenceID No lines have duplicate occurrenceID ✓ Validated each line has a occurrenceID, and each occurrenceID is unique No lines are missing a basisOfRecord All lines have basisOfRecord that matches the Darwin Core Type Vocabulary No lines have ambiguous basisOfRecord 'occurrence'. ✓ Validated each line has a basisOfRecord, and each basisOfRecord matches the Darwin Core Type Vocabulary Archive validated Archive has been compressed Archive version #1.4 generated successfully!
Do you have any ideas how to check why the dataset is failing to register with GBIF.org?
Thanks,
Rui Figueira
Hi Rui, Maybe stupid, but did you register the dataset to GBIF? Best regards *Ir. André Heughebaert* IT Coordinator at the Belgian Biodiversity Platform http://www.biodiversity.be/ Head of Delegation to GBIF https://www.gbif.org/ ORCID 0000-0002-7839-5300 http://orcid.org/0000-0002-7839-5300
On Tue, 25 Jan 2022 at 14:12, Rui Figueira ruifigueira@isa.ulisboa.pt wrote:
Dear all,
The following dataset is failing to register with GBIF, on publish:
http://ipt.gbif.pt/ipt/resource?r=stph
The publisher is https://www.gbif.org/publisher/4c5bf646-457d-431d-b055-6c27f468ff0a, which is already associated to our IPT. I checked the DwC-A, and everything seems normal
The publication log is the following:
Archive generation started for version #1.4 Start writing data file for Darwin Core Occurrence No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines with fewer columns than mapped for mapping Darwin Core Occurrence in source stph_gbif All lines match the filter criteria for mapping Darwin Core Occurrence in source stph_gbif Data file written for Darwin Core Occurrence with 404 records and 34 columns All data files completed EML file added meta.xml archive descriptor written Validating the core file: occurrence.txt. Depending on the number of records, this can take a while. ? Validating the core basisOfRecord is always present and its value matches the Darwin Core Type Vocabulary. ? Validating the core ID field occurrenceID is always present and unique. No lines are missing occurrenceID No lines have duplicate occurrenceID ✓ Validated each line has a occurrenceID, and each occurrenceID is unique No lines are missing a basisOfRecord All lines have basisOfRecord that matches the Darwin Core Type Vocabulary No lines have ambiguous basisOfRecord 'occurrence'. ✓ Validated each line has a basisOfRecord, and each basisOfRecord matches the Darwin Core Type Vocabulary Archive validated Archive has been compressed Archive version #1.4 generated successfully!
Do you have any ideas how to check why the dataset is failing to register with GBIF.org?
Thanks,
Rui Figueira
IPT mailing list IPT@lists.gbif.org https://lists.gbif.org/mailman/listinfo/ipt
Not stupid at all! It is it!
Many thanks, André! That's the experience of working a lot with users... It was not me doing the publications, and assumed that was done!
------------------
Rui Figueira Coordenador do Nó Português do GBIF ruifigueira@isa.ulisboa.pt Instituto Superior de Agronomia Herbário Tapada da Ajuda, 1349-017 Lisboa, Portugal Tel. +351 213653165 | Fax. +351 213653195 http://www.gbif.pt http://www.isa.ulisboa.pt
On 1/25/22 13:37, André Heughebaert wrote:
Hi Rui, Maybe stupid, but did you register the dataset to GBIF? Best regards *Ir. André Heughebaert* IT Coordinator at the Belgian Biodiversity Platform http://www.biodiversity.be/ Head of Delegation to GBIF https://www.gbif.org/ ORCID 0000-0002-7839-5300 http://orcid.org/0000-0002-7839-5300
On Tue, 25 Jan 2022 at 14:12, Rui Figueira ruifigueira@isa.ulisboa.pt wrote:
Dear all, The following dataset is failing to register with GBIF, on publish: http://ipt.gbif.pt/ipt/resource?r=stph The publisher is https://www.gbif.org/publisher/4c5bf646-457d-431d-b055-6c27f468ff0a, which is already associated to our IPT. I checked the DwC-A, and everything seems normal The publication log is the following: Archive generation started for version #1.4 Start writing data file for Darwin Core Occurrence No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines with fewer columns than mapped for mapping Darwin Core Occurrence in source stph_gbif All lines match the filter criteria for mapping Darwin Core Occurrence in source stph_gbif Data file written for Darwin Core Occurrence with 404 records and 34 columns All data files completed EML file added meta.xml archive descriptor written Validating the core file: occurrence.txt. Depending on the number of records, this can take a while. ? Validating the core basisOfRecord is always present and its value matches the Darwin Core Type Vocabulary. ? Validating the core ID field occurrenceID is always present and unique. No lines are missing occurrenceID No lines have duplicate occurrenceID ✓ Validated each line has a occurrenceID, and each occurrenceID is unique No lines are missing a basisOfRecord All lines have basisOfRecord that matches the Darwin Core Type Vocabulary No lines have ambiguous basisOfRecord 'occurrence'. ✓ Validated each line has a basisOfRecord, and each basisOfRecord matches the Darwin Core Type Vocabulary Archive validated Archive has been compressed Archive version #1.4 generated successfully! Do you have any ideas how to check why the dataset is failing to register with GBIF.org? Thanks, Rui Figueira _______________________________________________ IPT mailing list IPT@lists.gbif.org https://lists.gbif.org/mailman/listinfo/ipt
BTW, Another trick: I always check – if having similar issues is - that all DwC Core Types and extensions are up to date
Isabel Calabuig M.Sc., Ph.D. biologist, Node manager, Data curator Natural History Museum of Denmark DIR +45 35321103 / MOB +45 22136624
From: André Heughebaert a.heughebaert@biodiversity.be Sent: 25. januar 2022 14:37 To: Rui Figueira ruifigueira@isa.ulisboa.pt Cc: ipt@lists.gbif.org Subject: Re: [IPT] resourse not registering
Hi Rui, Maybe stupid, but did you register the dataset to GBIF? Best regards Ir. André Heughebaert IT Coordinator at the Belgian Biodiversity Platformhttp://www.biodiversity.be/ Head of Delegation to GBIFhttps://www.gbif.org/ ORCID 0000-0002-7839-5300http://orcid.org/0000-0002-7839-5300
On Tue, 25 Jan 2022 at 14:12, Rui Figueira <ruifigueira@isa.ulisboa.ptmailto:ruifigueira@isa.ulisboa.pt> wrote: Dear all,
The following dataset is failing to register with GBIF, on publish:
http://ipt.gbif.pt/ipt/resource?r=stph
The publisher is https://www.gbif.org/publisher/4c5bf646-457d-431d-b055-6c27f468ff0a, which is already associated to our IPT. I checked the DwC-A, and everything seems normal
The publication log is the following:
Archive generation started for version #1.4 Start writing data file for Darwin Core Occurrence No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines were skipped due to errors for mapping Darwin Core Occurrence in source stph_gbif No lines with fewer columns than mapped for mapping Darwin Core Occurrence in source stph_gbif All lines match the filter criteria for mapping Darwin Core Occurrence in source stph_gbif Data file written for Darwin Core Occurrence with 404 records and 34 columns All data files completed EML file added meta.xml archive descriptor written Validating the core file: occurrence.txt. Depending on the number of records, this can take a while. ? Validating the core basisOfRecord is always present and its value matches the Darwin Core Type Vocabulary. ? Validating the core ID field occurrenceID is always present and unique. No lines are missing occurrenceID No lines have duplicate occurrenceID ✓ Validated each line has a occurrenceID, and each occurrenceID is unique No lines are missing a basisOfRecord All lines have basisOfRecord that matches the Darwin Core Type Vocabulary No lines have ambiguous basisOfRecord 'occurrence'. ✓ Validated each line has a basisOfRecord, and each basisOfRecord matches the Darwin Core Type Vocabulary Archive validated Archive has been compressed Archive version #1.4 generated successfully!
Do you have any ideas how to check why the dataset is failing to register with GBIF.org?
Thanks,
Rui Figueira
_______________________________________________ IPT mailing list IPT@lists.gbif.orgmailto:IPT@lists.gbif.org https://lists.gbif.org/mailman/listinfo/ipt
participants (3)
-
André Heughebaert -
Isabel Calabuig -
Rui Figueira