Re: [IPT] [ZooKeys] GBIF IPT

29 Jan 2010


      Dear Ivailo
Sorry for the delay in replying but I have been away.
I get a timeout when I try and reach http://85.130.9.84:8080/ipt/index.html 
  - is it running?
I believe what you are seeing relates to a critical bug that is now  
fixed, but I would like to try and find a workaround for your issue.
Please can you send all future questions to the ipt@lists.gbif.org to  
make sure that you get the best and quickest response?
Best wishes,
Tim
On Jan 6, 2010, at 9:32 AM, Ivailo Stoyanov wrote:
...
Dear Tim,
I need to upload another dataset into the ZooKeys IPT (http://85.130.9.84:8080/ipt/index.html 
), but after entering the basic metadata for a new "Occurence  
Resource" I get the following errors and can not proceed:
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======================================================================
Yikes!
javax.servlet.ServletException: could not insert:  
[org.gbif.provider.model.OccurrenceResource]
   at  
net.sf.ehcache.constructs.web.filter.Filter.logThrowable(Filter.java: 
152)
   at net.sf.ehcache.constructs.web.filter.Filter.doFilter(Filter.java: 
97)
   at  
org 
.apache 
.catalina 
.core 
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
215)
   at  
org 
.apache 
.catalina 
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
   at  
org 
.appfuse 
.webapp.filter.LocaleFilter.doFilterInternal(LocaleFilter.java:74)
   at  
org 
.springframework 
.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java: 
76)
   at  
org 
.apache 
.catalina 
.core 
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
215)
   at  
org 
.apache 
.catalina 
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
   at  
org 
.springframework 
.orm 
.hibernate3 
.support 
.OpenSessionInViewFilter 
.doFilterInternal(OpenSessionInViewFilter.java:198)
   at  
org 
.springframework 
.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java: 
76)
   at  
org 
.apache 
.catalina 
.core 
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
215)
   at  
org 
.apache 
.catalina 
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:359)
   at org.springframework.security.intercept.web.FilterSecurityInterceptor.invoke 
(FilterSecurityInterceptor.java:109)
   at org.springframework.security.intercept.web.FilterSecurityInterceptor.doFilter 
(FilterSecurityInterceptor.java:83)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.ui 
.ExceptionTranslationFilter 
.doFilterHttp(ExceptionTranslationFilter.java:101)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.providers 
.anonymous 
.AnonymousProcessingFilter 
.doFilterHttp(AnonymousProcessingFilter.java:105)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.ui 
.rememberme 
.RememberMeProcessingFilter 
.doFilterHttp(RememberMeProcessingFilter.java:116)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.wrapper 
.SecurityContextHolderAwareRequestFilter 
.doFilterHttp(SecurityContextHolderAwareRequestFilter.java:91)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.ui 
.basicauth 
.BasicProcessingFilter.doFilterHttp(BasicProcessingFilter.java:172)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.ui 
.AbstractProcessingFilter.doFilterHttp(AbstractProcessingFilter.java: 
268)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security.ui.logout.LogoutFilter.doFilterHttp(LogoutFilter.java:87)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.ui 
.SessionFixationProtectionFilter 
.doFilterHttp(SessionFixationProtectionFilter.java:61)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security 
.context 
.HttpSessionContextIntegrationFilter 
.doFilterHttp(HttpSessionContextIntegrationFilter.java:235)
   at  
org 
.springframework 
.security.ui.SpringSecurityFilter.doFilter(SpringSecurityFilter.java: 
53)
   at org.springframework.security.util.FilterChainProxy 
$VirtualFilterChain.doFilter(FilterChainProxy.java:371)
   at  
org 
.springframework 
.security.util.FilterChainProxy.doFilter(FilterChainProxy.java:174)
   at org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate 
(DelegatingFilterProxy.java:236)
   at  
org 
.springframework 
.web 
.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
   at  
org 
.apache 
.catalina 
.core 
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
215)
   at  
org 
.apache 
.catalina 
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
   at org.springframework.web.filter.CharacterEncodingFilter.doFilterInternal 
(CharacterEncodingFilter.java:96)
   at  
org 
.springframework 
.web.filter.OncePerRequestFilter.doFilter(OncePerRequestFilter.java: 
76)
   at  
org 
.apache 
.catalina 
.core 
.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java: 
215)
   at  
org 
.apache 
.catalina 
.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:188)
   at  
org 
.apache 
.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java: 
213)
   at  
org 
.apache 
.catalina.core.StandardContextValve.invoke(StandardContextValve.java: 
172)
   at  
org 
.apache 
.catalina.core.StandardHostValve.invoke(StandardHostValve.java:127)
   at  
org 
.apache 
.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:117)
   at  
org 
.apache 
.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java: 
108)
   at  
org 
.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java: 
174)
   at  
org 
.apache.coyote.http11.Http11Processor.process(Http11Processor.java: 
875)
   at org.apache.coyote.http11.Http11BaseProtocol 
$Http11ConnectionHandler.processConnection(Http11BaseProtocol.java: 
665)
   at  
org 
.apache 
.tomcat.util.net.PoolTcpEndpoint.processSocket(PoolTcpEndpoint.java: 
528)
   at  
org 
.apache 
.tomcat 
.util 
.net 
.LeaderFollowerWorkerThread.runIt(LeaderFollowerWorkerThread.java:81)
   at org.apache.tomcat.util.threads.ThreadPool 
$ControlRunnable.run(ThreadPool.java:689)
   at java.lang.Thread.run(Unknown Source)
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======================================================================
What can I do now in order to reach the upload interface?
Best wishes for the New Year,
Ivailo
-- 
I. Stoyanov
Editorial Secretary
ZOOKEYS -- http://pensoftonline.net/zookeys
BIORISK -- http://pensoftonline.net/biorisk

Tim Robertson

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