examples of datasets using Identification History extensions
Hi Niels and rest of IPT list suscriptors. I saw Niels Klazenga message to TDWG list, about using DarwinCore extensions in IPT and mapping them from mysql databases. I am not currently using IPT yet, but I also try to figure out how to do the same thing, and also wondering how the final results will be. Regarding that, I still couldn't find any GBIF dataset which is using the Identification History extension. I would like to see how those date look like when they are searched through gbif portal. Maybe any of you can provide me with links to occurrence datasets (preferrably herbaria) which are provinding Identification History data? By the way ... is it possible to use that extension using a Tapirlink provider? If so, I would also like to know about some examples of providers using it. Thanks a lot David On Mon, Sep 1, 2014 at 3:33 PM, Niels Klazenga < Niels.Klazenga@rbg.vic.gov.au> wrote:
Thanks Tim and Kyle, I have signed up to the IPT list, to which I will send any further questions, but thanks to your responses I have already worked out how to do what I wanted to do. Turns out that I did overlook something, namely that I needed to create multiple data sources within the same resource. Pretty obvious in hindsight.
Niels
Tim Robertson <trobertson@gbif.org> 09/01/14 5:43 PM >>>
Hi Niels,
The correct mailing list is the IPT list ( http://lists.gbif.org/mailman/listinfo/ipt). I suggest mailing that, providing as much information as possible - IPT version, the core and extensions you are using, the SQL statements you use etc.
The IPT does allows multiple mappings per source file which is a common practice, but you cannot map to an extension until you have mapped the core. There are some workarounds there, such as creating a core with only the minimum fields, and then effectively mapping an extension in a 1:1 manner (rather than multiple rows per core record).
Cheers, Tim
On 01 Sep 2014, at 09:11, Niels Klazenga <Niels.Klazenga@rbg.vic.gov.au> wrote:
Dear all, Not sure if this is appropriate use of this list, but I don't know where else to go. I was hoping I could prevail on someone to help me find out how to use extensions in the IPT provider for data from an SQL database, without creating duplicate rows in the core file or empty rows (apart from the core ID) in the extension file(s). I think I tried everything, but I must be overlooking something.
I found this, http://lists.gbif.org/pipermail/ipt/2013-October/000545.html, during my googling for an answer, which I think has the solution, but I can't work out how to implement it, as my IPT installation doesn't seem to let me create a mapping to just an extension and only lets me use one data mapping source for any resource.
Niels
___________________________________________________________
Niels Klazenga Programmer Information Technology, Biodiversity Information Officer
National Herbarium of Victoria, Royal Botanic Gardens Birdwood Avenue South Yarra, VIC 3141 Australia Tel: (03) 9252 2346 Fax: (03) 9252 2444
e-mail: niels.klazenga@rbg.vic.gov.au
-- This email and any attachments may contain information that is personal, confidential, legally privileged and/or copyright. No part of it should be reproduced, adapted or communicated without the prior written consent of the sender and/or copyright owner. It is the responsibility of the recipient to check for and remove viruses. If you have received this email in error, please notify the sender by return email, delete it from your system and destroy any copies. You are not authorised to use, communicate or rely on the information contained in this email. Please consider the environment before printing this email. This email was Anti Virus checked by Sophos UTM.
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-- David García San León (dixitalización / control de fondos) Herbario SANT Facultade de Farmacia - Laboratorio de Botánica Universidade de Santiago de Compostela 15782 - Galicia (Spain) http://www.usc.es/herbario Tel. +34 881815022 Fax +34 981594912 Skype: herbarium_sant Twitter: @SANT_Herbarium
On Thu, 19 Mar 2015 13:39:07 +0100 Herbario SANT <sant.herbarium@gmail.com> wrote:
Regarding that, I still couldn't find any GBIF dataset which is using the Identification History extension. I would like to see how those date look like when they are searched through gbif portal.
Maybe any of you can provide me with links to occurrence datasets (preferrably herbaria) which are provinding Identification History data?
We are using the Darwin Core Identification History extension in our IPT instance at the Harvard University Herbaria. http://www.gbif.org/dataset/861e6afe-f762-11e1-a439-00145eb45e9a http://firuta.huh.harvard.edu/ipt/resource.do?r=harvard_university_herbaria A couple of examples of record that contains several identifications are A barcode-00132972 and AMES barcode-00269925. http://www.gbif.org/occurrence/727285001/verbatim http://kiki.huh.harvard.edu/databases/specimen_search.php?barcode=00132972 http://www.gbif.org/occurrence/727477001/verbatim http://kiki.huh.harvard.edu/databases/specimen_search.php?barcode=00269925 -Paul -- Paul J. Morris Biodiversity Informatics Manager Harvard University Herbaria/Museum of Comparative Zoölogy mole@morris.net AA3SD PGP public key available
Hi all We are using the identification history extension here - http://ipt.landcareresearch.co.nz/resource.do?r=allan_herbarium Cheers Aaron Dr Aaron Wilton | Biodiversity Informatics Allan Herbarium (CHR) | Manaaki Whenua - Landcare Research | PO Box 69040, Lincoln 7640 | New Zealand Tel +64 3 321 9838 | Fax +64 3 321 9998 | Mobile +64 21 689 315 Flora of New Zealand �� http://www.nzflora.info | Ng�� Tipu o Aoteroa �C New Zealand Plants �� http://nzflora.landcareresearch.co.nz<http://nzflora.landcareresearch.co.nz/> From: IPT [mailto:ipt-bounces@lists.gbif.org] On Behalf Of Herbario SANT Sent: Friday, 20 March 2015 1:39 a.m. To: ipt@lists.gbif.org Subject: [IPT] examples of datasets using Identification History extensions Hi Niels and rest of IPT list suscriptors. I saw Niels Klazenga message to TDWG list, about using DarwinCore extensions in IPT and mapping them from mysql databases. I am not currently using IPT yet, but I also try to figure out how to do the same thing, and also wondering how the final results will be. Regarding that, I still couldn't find any GBIF dataset which is using the Identification History extension. I would like to see how those date look like when they are searched through gbif portal. Maybe any of you can provide me with links to occurrence datasets (preferrably herbaria) which are provinding Identification History data? By the way ... is it possible to use that extension using a Tapirlink provider? If so, I would also like to know about some examples of providers using it. Thanks a lot David On Mon, Sep 1, 2014 at 3:33 PM, Niels Klazenga <Niels.Klazenga@rbg.vic.gov.au<mailto:Niels.Klazenga@rbg.vic.gov.au>> wrote: Thanks Tim and Kyle, I have signed up to the IPT list, to which I will send any further questions, but thanks to your responses I have already worked out how to do what I wanted to do. Turns out that I did overlook something, namely that I needed to create multiple data sources within the same resource. Pretty obvious in hindsight. Niels
Tim Robertson <trobertson@gbif.org<mailto:trobertson@gbif.org>> 09/01/14 5:43 PM >>>
Hi Niels, The correct mailing list is the IPT list (http://lists.gbif.org/mailman/listinfo/ipt). I suggest mailing that, providing as much information as possible - IPT version, the core and extensions you are using, the SQL statements you use etc. The IPT does allows multiple mappings per source file which is a common practice, but you cannot map to an extension until you have mapped the core. There are some workarounds there, such as creating a core with only the minimum fields, and then effectively mapping an extension in a 1:1 manner (rather than multiple rows per core record). Cheers, Tim On 01 Sep 2014, at 09:11, Niels Klazenga <Niels.Klazenga@rbg.vic.gov.au<mailto:Niels.Klazenga@rbg.vic.gov.au>> wrote: Dear all, Not sure if this is appropriate use of this list, but I don't know where else to go. I was hoping I could prevail on someone to help me find out how to use extensions in the IPT provider for data from an SQL database, without creating duplicate rows in the core file or empty rows (apart from the core ID) in the extension file(s). I think I tried everything, but I must be overlooking something. I found this, http://lists.gbif.org/pipermail/ipt/2013-October/000545.html, during my googling for an answer, which I think has the solution, but I can't work out how to implement it, as my IPT installation doesn't seem to let me create a mapping to just an extension and only lets me use one data mapping source for any resource. Niels ___________________________________________________________ Niels Klazenga Programmer Information Technology, Biodiversity Information Officer National Herbarium of Victoria, Royal Botanic Gardens Birdwood Avenue South Yarra, VIC 3141 Australia Tel: (03) 9252 2346 Fax: (03) 9252 2444 e-mail: niels.klazenga@rbg.vic.gov.au<mailto:niels.klazenga@rbg.vic.gov.au> -- This email and any attachments may contain information that is personal, confidential, legally privileged and/or copyright. No part of it should be reproduced, adapted or communicated without the prior written consent of the sender and/or copyright owner. It is the responsibility of the recipient to check for and remove viruses. If you have received this email in error, please notify the sender by return email, delete it from your system and destroy any copies. You are not authorised to use, communicate or rely on the information contained in this email. Please consider the environment before printing this email. This email was Anti Virus checked by Sophos UTM. _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content _______________________________________________ tdwg-content mailing list tdwg-content@lists.tdwg.org<mailto:tdwg-content@lists.tdwg.org> http://lists.tdwg.org/mailman/listinfo/tdwg-content -- David Garc��a San Le��n (dixitalizaci��n / control de fondos) Herbario SANT Facultade de Farmacia - Laboratorio de Bot��nica Universidade de Santiago de Compostela 15782 - Galicia (Spain) http://www.usc.es/herbario Tel. +34 881815022 Fax +34 981594912 Skype: herbarium_sant Twitter: @SANT_Herbarium ________________________________ Please consider the environment before printing this email Warning: This electronic message together with any attachments is confidential. If you receive it in error: (i) you must not read, use, disclose, copy or retain it; (ii) please contact the sender immediately by reply email and then delete the emails. The views expressed in this email may not be those of Landcare Research New Zealand Limited. http://www.landcareresearch.co.nz
participants (3)
-
Aaron Wilton -
Herbario SANT -
Paul J. Morris