Re: [Ala-portal] Query to get data for a country not published by that country
Dear Frederico,
Many thanks for this clarification.
If that sort of query could be implemented, it would greatly facilitate the data management of our national data portal in the future.
Regards,
Rui
On 02/24/2016 12:29 PM, Federico Mendez wrote:
Dear Rui, I¹m afraid that by now the only way of getting those records is how you described: downloading all the portuguese records and then remove records coming from portuguese institutions. In the next months we¹ll be analysing the feasibility of implementing ¹negated¹ expression in out API to be able to compose queries like: country=PT&publishingCountry=NOT PT.
Regards, Federico Mendez.
On 23/02/16 15:04, "Mélianie Raymond" mraymond@gbif.org wrote:
-----Original Message----- From: Rui Figueira [mailto:ruifigueira@isa.ulisboa.pt] Sent: Tuesday, February 23, 2016 11:19 AM To: Mélianie Raymond; ala-portal@lists.gbif.org; Federico Mendez Subject: Re: [Ala-portal] Query to get data for a country not published by that country
Hi Méliane,
Yes, that's it:
identify all occurrences in Portugal published by institutions NOT in Portugal.
If you could create that custom query, it would greatly facilitate the management of the national data portal in the future.
But for the time being, I understand that the only option is to download all occurrences for Portugal, and afterwards filter it to remove records published by Portuguese, right?
Thanks,
Rui
Rui Figueira Coordenador do Nó Português do GBIF ruifigueira@isa.ulisboa.pt Instituto Superior de Agronomia Herbário Tapada da Ajuda, 1349-017 Lisboa, Portugal Tel. +351 213653421 | Fax. +351 213653195 http://www.gbif.pt http://www.isa.ulisboa.pt
On 02/23/2016 09:05 AM, Mélianie Raymond wrote:
Dear Rui,
Thanks for your message. I have discussed this with Federico and we would just like to be sure we have understood the request correctly.
Here is an example of a dataset published by the Netherlands about occurrences in Portugal: doi:10.15468/eswvar (http://www.gbif.org/dataset/9cbcf2b3-448f-48ce-9510-39e25c6234a8).
However, the datasets published by institutions NOT in Portugal typically tend to be on broader areas, only including some occurrences that fall in Portugal. You can use the API to identify all occurrences in Portugal: http://api.gbif.org/v1/occurrence/search?country=PT.
We could make a custom query to identify all occurrences in Portugal published by institutions NOT in Portugal if this is what you need?
Thanks! Melianie
Dr. Mélianie Raymond Senior Programme Officer for Node Development GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen, Denmark Tel.: +45 35 32 14 96/ Fax: +45 35 32 14 80 E-mail: mraymond@gbif.org Website: www.gbif.org
-----Original Message----- From: Ala-portal [mailto:ala-portal-bounces@lists.gbif.org] On Behalf Of Rui Figueira Sent: Friday, February 19, 2016 3:57 PM To: ala-portal@lists.gbif.org Subject: [Ala-portal] Query to get data for a country not published by that country
Hello,
We would like to add to our test implementation of ALA one resource with the data for Portugal which IS NOT published by portuguese institutions. Is it possible to define a query in the GBIF data portal to achieve this?
Thanks,
Rui Figueira
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
HI Rui,
In case it helps, you could do this with some code by querying the list of publishing countries:
http://api.gbif.org/v1/node/country
and use this list (after removing PT) to query with country=PT&publishingCountry=AD. This isn’t as handy as the single query (and single download) you are suggesting, but it should get you there via a longer route.
Hope this helps,
Dave Martin ALA
On 24 Feb 2016, at 2:07 pm, Rui Figueira <ruifigueira@isa.ulisboa.ptmailto:ruifigueira@isa.ulisboa.pt> wrote:
Dear Frederico,
Many thanks for this clarification.
If that sort of query could be implemented, it would greatly facilitate the data management of our national data portal in the future.
Regards,
Rui
On 02/24/2016 12:29 PM, Federico Mendez wrote: Dear Rui, I¹m afraid that by now the only way of getting those records is how you described: downloading all the portuguese records and then remove records coming from portuguese institutions. In the next months we¹ll be analysing the feasibility of implementing ¹negated¹ expression in out API to be able to compose queries like: country=PT&publishingCountry=NOT PT.
Regards, Federico Mendez.
On 23/02/16 15:04, "Mélianie Raymond" <mraymond@gbif.orgmailto:mraymond@gbif.org> wrote: -----Original Message----- From: Rui Figueira [mailto:ruifigueira@isa.ulisboa.pt] Sent: Tuesday, February 23, 2016 11:19 AM To: Mélianie Raymond; ala-portal@lists.gbif.orgmailto:ala-portal@lists.gbif.org; Federico Mendez Subject: Re: [Ala-portal] Query to get data for a country not published by that country
Hi Méliane,
Yes, that's it:
identify all occurrences in Portugal published by institutions NOT in Portugal. If you could create that custom query, it would greatly facilitate the management of the national data portal in the future.
But for the time being, I understand that the only option is to download all occurrences for Portugal, and afterwards filter it to remove records published by Portuguese, right?
Thanks,
Rui
------------------
Rui Figueira Coordenador do Nó Português do GBIF ruifigueira@isa.ulisboa.ptmailto:ruifigueira@isa.ulisboa.pt Instituto Superior de Agronomia Herbário Tapada da Ajuda, 1349-017 Lisboa, Portugal Tel. +351 213653421 | Fax. +351 213653195 http://www.gbif.pt http://www.isa.ulisboa.pt
On 02/23/2016 09:05 AM, Mélianie Raymond wrote: Dear Rui,
Thanks for your message. I have discussed this with Federico and we would just like to be sure we have understood the request correctly.
Here is an example of a dataset published by the Netherlands about occurrences in Portugal: doi:10.15468/eswvar (http://www.gbif.org/dataset/9cbcf2b3-448f-48ce-9510-39e25c6234a8).
However, the datasets published by institutions NOT in Portugal typically tend to be on broader areas, only including some occurrences that fall in Portugal. You can use the API to identify all occurrences in Portugal: http://api.gbif.org/v1/occurrence/search?country=PT.
We could make a custom query to identify all occurrences in Portugal published by institutions NOT in Portugal if this is what you need?
Thanks! Melianie
--------------------------------------- Dr. Mélianie Raymond Senior Programme Officer for Node Development GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen, Denmark Tel.: +45 35 32 14 96/ Fax: +45 35 32 14 80 E-mail: mraymond@gbif.org Website: www.gbif.org
-----Original Message----- From: Ala-portal [mailto:ala-portal-bounces@lists.gbif.org] On Behalf Of Rui Figueira Sent: Friday, February 19, 2016 3:57 PM To: ala-portal@lists.gbif.org Subject: [Ala-portal] Query to get data for a country not published by that country
Hello,
We would like to add to our test implementation of ALA one resource with the data for Portugal which IS NOT published by portuguese institutions. Is it possible to define a query in the GBIF data portal to achieve this?
Thanks,
Rui Figueira
_______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
_______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.orgmailto:Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Hi Dave,
Thanks for the good tip. It implies some coding, but then we avoid having to edit the dataset manually, which is always error prone.
Cheers,
Rui
------------------
Rui Figueira Coordenador do Nó Português do GBIF ruifigueira@isa.ulisboa.pt Instituto Superior de Agronomia Herbário Tapada da Ajuda, 1349-017 Lisboa, Portugal Tel. +351 213653421 | Fax. +351 213653195 http://www.gbif.pt http://www.isa.ulisboa.pt
On 02/24/2016 03:09 PM, David.Martin@csiro.au wrote:
HI Rui,
In case it helps, you could do this with some code by querying the list of publishing countries:
http://api.gbif.org/v1/node/country
and use this list (after removing PT) to query with country=PT&publishingCountry=AD. This isn’t as handy as the single query (and single download) you are suggesting, but it should get you there via a longer route.
Hope this helps,
Dave Martin ALA
On 24 Feb 2016, at 2:07 pm, Rui Figueira <ruifigueira@isa.ulisboa.pt mailto:ruifigueira@isa.ulisboa.pt> wrote:
Dear Frederico,
Many thanks for this clarification.
If that sort of query could be implemented, it would greatly facilitate the data management of our national data portal in the future.
Regards,
Rui
On 02/24/2016 12:29 PM, Federico Mendez wrote:
Dear Rui, I¹m afraid that by now the only way of getting those records is how you described: downloading all the portuguese records and then remove records coming from portuguese institutions. In the next months we¹ll be analysing the feasibility of implementing ¹negated¹ expression in out API to be able to compose queries like: country=PT&publishingCountry=NOT PT.
Regards, Federico Mendez.
On 23/02/16 15:04, "Mélianie Raymond" <mraymond@gbif.org mailto:mraymond@gbif.org> wrote:
-----Original Message----- From: Rui Figueira [mailto:ruifigueira@isa.ulisboa.pt] Sent: Tuesday, February 23, 2016 11:19 AM To: Mélianie Raymond; ala-portal@lists.gbif.org mailto:ala-portal@lists.gbif.org; Federico Mendez Subject: Re: [Ala-portal] Query to get data for a country not published by that country
Hi Méliane,
Yes, that's it:
identify all occurrences in Portugal published by institutions NOT in Portugal.
If you could create that custom query, it would greatly facilitate the management of the national data portal in the future.
But for the time being, I understand that the only option is to download all occurrences for Portugal, and afterwards filter it to remove records published by Portuguese, right?
Thanks,
Rui
Rui Figueira Coordenador do Nó Português do GBIF ruifigueira@isa.ulisboa.pt mailto:ruifigueira@isa.ulisboa.pt Instituto Superior de Agronomia Herbário Tapada da Ajuda, 1349-017 Lisboa, Portugal Tel. +351 213653421 | Fax. +351 213653195 http://www.gbif.pt http://www.isa.ulisboa.pt
On 02/23/2016 09:05 AM, Mélianie Raymond wrote:
Dear Rui,
Thanks for your message. I have discussed this with Federico and we would just like to be sure we have understood the request correctly.
Here is an example of a dataset published by the Netherlands about occurrences in Portugal: doi:10.15468/eswvar (http://www.gbif.org/dataset/9cbcf2b3-448f-48ce-9510-39e25c6234a8).
However, the datasets published by institutions NOT in Portugal typically tend to be on broader areas, only including some occurrences that fall in Portugal. You can use the API to identify all occurrences in Portugal: http://api.gbif.org/v1/occurrence/search?country=PT.
We could make a custom query to identify all occurrences in Portugal published by institutions NOT in Portugal if this is what you need?
Thanks! Melianie
Dr. Mélianie Raymond Senior Programme Officer for Node Development GBIF Secretariat Universitetsparken 15 DK-2100 Copenhagen, Denmark Tel.: +45 35 32 14 96/ Fax: +45 35 32 14 80 E-mail: mraymond@gbif.org Website: www.gbif.org
-----Original Message----- From: Ala-portal [mailto:ala-portal-bounces@lists.gbif.org] On Behalf Of Rui Figueira Sent: Friday, February 19, 2016 3:57 PM To: ala-portal@lists.gbif.org Subject: [Ala-portal] Query to get data for a country not published by that country
Hello,
We would like to add to our test implementation of ALA one resource with the data for Portugal which IS NOT published by portuguese institutions. Is it possible to define a query in the GBIF data portal to achieve this?
Thanks,
Rui Figueira
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org mailto:Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
participants (2)
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David.Martin＠csiro.au -
Rui Figueira