Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
_______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Hi Burke,
This problem should now be fixed. See [1] We've done a minor update of the biocache-store and the collectory and theres an update to an external config file. These updates are picked up if you use the latest ansible scripts.
Cheers
Dave [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:... ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of David.Martin@csiro.au [David.Martin@csiro.au] Sent: 07 June 2014 09:11 To: bko@gbif.org; Ala-portal@lists.gbif.org Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
_______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Thanks Dave - I can confirm that the mapping seems to work now.[1]
Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
It’s very nice to see charts and a map after only a few steps!
Cheers,
Burke
[1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
On 07 Jun 2014, at 16:31, David.Martin@csiro.au wrote:
Hi Burke,
This problem should now be fixed. See [1] We've done a minor update of the biocache-store and the collectory and theres an update to an external config file. These updates are picked up if you use the latest ansible scripts.
Cheers
Dave [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:... ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of David.Martin@csiro.au [David.Martin@csiro.au] Sent: 07 June 2014 09:11 To: bko@gbif.org; Ala-portal@lists.gbif.org Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Thanks Burke.
The biocache-store-1.1.1 release should get around this problem. The ansible scripts are now pointing to 1.1.1 as of this (australian) morning [1].
Dave [1] https://github.com/gbif/ala-install/commit/d67439e8b4226987d13ccd53396826e57... ________________________________________ From: Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 09 June 2014 23:39 To: Martin, Dave (CES, Black Mountain) Cc: Ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Dave - I can confirm that the mapping seems to work now.[1]
Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
It’s very nice to see charts and a map after only a few steps!
Cheers,
Burke
[1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
On 07 Jun 2014, at 16:31, David.Martin@csiro.au wrote:
Hi Burke,
This problem should now be fixed. See [1] We've done a minor update of the biocache-store and the collectory and theres an update to an external config file. These updates are picked up if you use the latest ansible scripts.
Cheers
Dave [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:... ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of David.Martin@csiro.au [David.Martin@csiro.au] Sent: 07 June 2014 09:11 To: bko@gbif.org; Ala-portal@lists.gbif.org Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Hi Dave,
With this update and the same sample DwC-A the " biocache> ingest dr0" produces the following error:
org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385) at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180) at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90) at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301) at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548) at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89) at scala.collection.immutable.List.foreach(List.scala:318) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala) org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385) at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180) at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90) at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301) at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548) at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89) at scala.collection.immutable.List.foreach(List.scala:318) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)
Does it look relevant to the latest version of biocache-store-1.1.1?
Thanks,
Burke
On Jun 10, 2014, at 9:29 AM, david.martin@csiro.au wrote:
Thanks Burke.
The biocache-store-1.1.1 release should get around this problem. The ansible scripts are now pointing to 1.1.1 as of this (australian) morning [1].
Dave [1] https://github.com/gbif/ala-install/commit/d67439e8b4226987d13ccd53396826e57... ________________________________________ From: Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 09 June 2014 23:39 To: Martin, Dave (CES, Black Mountain) Cc: Ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Dave - I can confirm that the mapping seems to work now.[1]
Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
It’s very nice to see charts and a map after only a few steps!
Cheers,
Burke
[1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
On 07 Jun 2014, at 16:31, David.Martin@csiro.au wrote:
Hi Burke,
This problem should now be fixed. See [1] We've done a minor update of the biocache-store and the collectory and theres an update to an external config file. These updates are picked up if you use the latest ansible scripts.
Cheers
Dave [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:... ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of David.Martin@csiro.au [David.Martin@csiro.au] Sent: 07 June 2014 09:11 To: bko@gbif.org; Ala-portal@lists.gbif.org Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Thanks Burke. No. It looks like the installation of SOLR has failed somehow. You should be able to see the SOLR admin console on http://10.1.1.2/solr
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 10 June 2014 20:12 To: Martin, Dave (CES, Black Mountain) Cc: Ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
Hi Dave,
With this update and the same sample DwC-A the " biocache> ingest dr0" produces the following error:
org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385) at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180) at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90) at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301) at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548) at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89) at scala.collection.immutable.List.foreach(List.scala:318) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala) org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385) at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180) at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90) at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301) at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548) at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89) at scala.collection.immutable.List.foreach(List.scala:318) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)
Does it look relevant to the latest version of biocache-store-1.1.1?
Thanks,
Burke
On Jun 10, 2014, at 9:29 AM, david.martin@csiro.au wrote:
Thanks Burke.
The biocache-store-1.1.1 release should get around this problem. The ansible scripts are now pointing to 1.1.1 as of this (australian) morning [1].
Dave [1] https://github.com/gbif/ala-install/commit/d67439e8b4226987d13ccd53396826e57... ________________________________________ From: Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 09 June 2014 23:39 To: Martin, Dave (CES, Black Mountain) Cc: Ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Dave - I can confirm that the mapping seems to work now.[1]
Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
It’s very nice to see charts and a map after only a few steps!
Cheers,
Burke
[1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
On 07 Jun 2014, at 16:31, David.Martin@csiro.au wrote:
Hi Burke,
This problem should now be fixed. See [1] We've done a minor update of the biocache-store and the collectory and theres an update to an external config file. These updates are picked up if you use the latest ansible scripts.
Cheers
Dave [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:... ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of David.Martin@csiro.au [David.Martin@csiro.au] Sent: 07 June 2014 09:11 To: bko@gbif.org; Ala-portal@lists.gbif.org Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
_______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Thanks Dave - it should be that for the last test in order to get the latest biocache-store I went straight to Ansible provisioning without destroying the vagrant box. After I start again after $ vagrant destroy I have 1) the solr working again; 2) the number of records correctly indexed; 3) and the map centred automatically.
Great!
Burke
On Jun 10, 2014, at 1:03 PM, David.Martin@csiro.au wrote:
Thanks Burke. No. It looks like the installation of SOLR has failed somehow. You should be able to see the SOLR admin console on http://10.1.1.2/solr
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 10 June 2014 20:12 To: Martin, Dave (CES, Black Mountain) Cc: Ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
Hi Dave,
With this update and the same sample DwC-A the " biocache> ingest dr0" produces the following error:
org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385) at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180) at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90) at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301) at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548) at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89) at scala.collection.immutable.List.foreach(List.scala:318) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala) org.apache.solr.client.solrj.impl.HttpSolrServer$RemoteSolrException: Server at http://10.1.1.2/solr returned non ok status:500, message:Internal Server Error at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:385) at org.apache.solr.client.solrj.impl.HttpSolrServer.request(HttpSolrServer.java:180) at org.apache.solr.client.solrj.request.QueryRequest.process(QueryRequest.java:90) at org.apache.solr.client.solrj.SolrServer.query(SolrServer.java:301) at au.org.ala.biocache.index.SolrIndexDAO.getDistinctValues(SolrIndexDAO.scala:548) at au.org.ala.biocache.load.DwCALoader.loadArchive(DwCALoader.scala:142) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:97) at au.org.ala.biocache.load.DwCALoader$$anonfun$load$1.apply(DwCALoader.scala:89) at scala.collection.immutable.List.foreach(List.scala:318) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:89) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:59) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$3.apply(CMD.scala:58) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:58) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)
Does it look relevant to the latest version of biocache-store-1.1.1?
Thanks,
Burke
On Jun 10, 2014, at 9:29 AM, david.martin@csiro.au wrote:
Thanks Burke.
The biocache-store-1.1.1 release should get around this problem. The ansible scripts are now pointing to 1.1.1 as of this (australian) morning [1].
Dave [1] https://github.com/gbif/ala-install/commit/d67439e8b4226987d13ccd53396826e57... ________________________________________ From: Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 09 June 2014 23:39 To: Martin, Dave (CES, Black Mountain) Cc: Ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Dave - I can confirm that the mapping seems to work now.[1]
Though for the same dataset, which contains 7 geo-referenced records, there is only one indexed and shown on the map. Could you reproduce it, please?
Also, for now reloading the mapping page will reset the centre to Australia. I would be better for users if it stays at the last position. I guess this needs a feature request issue.
It’s very nice to see charts and a map after only a few steps!
Cheers,
Burke
[1] http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301 (at the very bottom)
On 07 Jun 2014, at 16:31, David.Martin@csiro.au wrote:
Hi Burke,
This problem should now be fixed. See [1] We've done a minor update of the biocache-store and the collectory and theres an update to an external config file. These updates are picked up if you use the latest ansible scripts.
Cheers
Dave [1] http://ala-demo.gbif.org/generic-hub/occurrences/search?q=data_resource_uid:... ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of David.Martin@csiro.au [David.Martin@csiro.au] Sent: 07 June 2014 09:11 To: bko@gbif.org; Ala-portal@lists.gbif.org Subject: [ExternalEmail] Re: [Ala-portal] Showing uploaded DwC-A on the map
Thanks Burke. I've reproduced the problem. It looks like there is a issue with loading the data from the GBIF download file. We'll look into it.
Dave ________________________________________ From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Burke Chih-Jen Ko [GBIF] [bko@gbif.org] Sent: 07 June 2014 00:47 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] Showing uploaded DwC-A on the map
But still - if I zoom out and switch to other map tiles, I couldn't see occurrence points on the map. Any log I should consult to sort out whether the occurrences are successfully indexed and processed?
Cheers,
Burke
On Jun 6, 2014, at 2:59 PM, "Burke Chih-Jen Ko [GBIF]" bko@gbif.org wrote:
Thanks Santiago - hum I have the impression but I must have missed that. I'll ensure the issue is logged.
Burke
On Jun 6, 2014, at 2:53 PM, Santiago sama@gbif.es wrote:
If you see the image of your map, you can see that the plus button is deactivated, because you have the maximum zoom, this is a bug, I think. I reported this problem through this list.
You only have to click on the less button and you will see your occurrences.
Kind regards. SaMa.
-----Mensaje original----- De: ala-portal-bounces@lists.gbif.org [mailto:ala-portal-bounces@lists.gbif.org] En nombre de Burke Chih-Jen Ko [GBIF] Enviado el: viernes, 06 de junio de 2014 14:46 Para: ala-portal@lists.gbif.org Asunto: [Ala-portal] Showing uploaded DwC-A on the map
Hi all,
I am currently writing steps to create an example data resource and to see them indexed and shown on the map. The DRAFT guide so far being: http://dev.gbif.org/wiki/pages/viewpage.action?pageId=12812301
As I finished the steps, by clicking the "view records", I couldn't find ways to see records and the map tiles. It seems no documentation about configuring this part yet, or is there anything I missed?
A screenshot attached: https://dl.dropboxusercontent.com/u/66568061/mapping.png.
Thanks in advance for hinting,
Burke _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
participants (3)
-
Burke Chih-Jen Ko [GBIF] -
David.Martin＠csiro.au -
Santiago