Thanks for testing that Daniel
For background information: This issue came following the GBIF API deploy last week which tightened up security. Previously people could discover download status without actually authenticating - while this posed no real risk, it was an oversight in the API security, and we addressed that. You will also note, that downloads are now much “wider” as GBIF support the full width of Darwin Core in the index now.
Thanks, Tim
On 28 Apr 2014, at 08:49, Daniel Lins daniel.lins@gmail.com wrote:
Hi Santiago,
I tried to add some GBIF resources from Brazil in my database, using the same functionality "Add all GBIF resources for a country" and works for me (resources with 0 records were not created and the download process was killed). After I tried to add one dataset of Spain (like your test case), and the system didn't raise any error message. However, the download never ends (In my GBIF profile page these download process was successfully finished).
Your Downloads FILTER Dataset SANT-Algae STATUS Ready for download (0 B 28.626 records - 1 datasets) CREATED 28/04/2014
Check the username and password and make sure if the folder "/data/collectory/upload" has write permission, because the downloaded files are saved in this folder by default.
Hope that this helps.
Cheers.
2014-04-25 3:46 GMT-03:00 sama sama@gbif.es: -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1
Dear David,
I tried to add one dataset through the option, all GBIF resource for a country, with your credentials and I also tried with my credentials:
http://193.146.75.144:8080/collectory/manage/gbifLoadCountry
But the Portal always shows me the next message:
Failed. Please check your authentication credentials are valid.
Could you check it?
Thank you.
Santiago Martínez de la Riva Vivanco GBIF.ES, Unidad de Coordinación Real Jardín Botánico CSIC Plaza de Murillo, 2 28014 Madrid, Spain Tel: +34 91 4293917 x 273 - sama@gbif.es - www.gbif.es - https://twitter.com/smr_sama
El 24/04/2014 12:29, David.Martin@csiro.au escribió:
I should have added, you'll need to remove the existing collectory.war and the expanded war from /var/lib/tomcat7/webapps and copy this war file into /var/lib/tomcat7/webapps renaming it to collectory.war.
Dave ________________________________________ From: sama [sama@gbif.es] Sent: 24 April 2014 20:26 To: Martin, Dave (CES, Black Mountain); ala-portal@lists.gbif.org Subject: Re: [Ala-portal] issues with the Collectory module.
Thanks so much for your quick reply.
I´m going to test it.
Kind regards. Santi.
Santiago Martínez de la Riva Vivanco GBIF.ES, Unidad de Coordinación Real Jardín Botánico CSIC Plaza de Murillo, 2 28014 Madrid, Spain Tel: +34 91 4293917 x 273 - sama@gbif.es - www.gbif.es - https://twitter.com/smr_sama
El 24/04/2014 12:24, David.Martin@csiro.au escribió:
Thanks for posting Santiago.
There is a new build of the collectory that should fix the problems you mentioned with the manual GBIF file upload and editing the data resource:
http://maven.ala.org.au/repository/au/org/ala/collectory/1.0/collectory-1.0....
This is now deployed on the demo server (http://ala-demo.gbif.org).
Hope this helps.
Dave Martin ALA
From: ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of sama [sama@gbif.es] Sent: 24 April 2014 17:03 To: ala-portal@lists.gbif.org Subject: Re: [Ala-portal] issues with the Collectory module.
My name is Santiago Martínez de la Riva. I'm member of node of Gbif Spain. We have installed the data portal of ALA and we have a problem with the collectory module.
We can't create new collections or institutions. When we try to add collections or institutions, the Portal shows the next message:
http://193.146.75.144:8080/collectory/dataResource/uploadGBIFFile
Could be an error caused by problems with permissions in the directory /data/collectory/upload? Because It seems that the server doesn't create the temporal file.
An unexpected error has occurred.
If this is the first time this page has appeared, try the refresh button in your browser.
If this fails, try to return to the home page and start again.
If this page is still displayed, please report the incident to ALA support. Click here to email ALA support.
The following is useful information that helps us discover what has happened. Please copy it into emails requesting support.
You might also like to expand the more detailed information by clicking on 'Show stack trace' and copying that text to us as well.
Thanks for your patience. Error 500: Executing action [uploadGBIFFile] of controller [au.org.ala.collectory.DataResourceController] caused exception: Runtime error executing action Servlet: grails URI: /collectory/grails/dataResource/uploadGBIFFile.dispatch Exception Message: /data/collectory/upload/tmp/1398257201760 (No such file or directory) Caused by: /data/collectory/upload/tmp/1398257201760 (No such file or directory) Class: ProviderGroupController At Line: [522] Code Snippet: Show stack trace Stack Trace
java.io.FileNotFoundException: /data/collectory/upload/tmp/1398257201760 (No such file or directory)
at java.io.FileOutputStream.<init>(FileOutputStream.java:221)at java.io.FileOutputStream.<init>(FileOutputStream.java:171)atorg.apache.commons.fileupload.disk.DiskFileItem.write(DiskFileItem.java:449)
atau.org.ala.collectory.GbifService.createGBIFResourceFromMultipart(GbifService.groovy:211)
atau.org.ala.collectory.ProviderGroupController$_closure22.doCall(ProviderGroupController.groovy:522)
atgrails.plugin.cache.web.filter.PageFragmentCachingFilter.doFilter(PageFragmentCachingFilter.java:195)
We have realized too that in the demo portal of ala shows another error which is related to updated process of one resource. When we try to modify the information of one resource. For example, for this resource:
http://ala-ono.it.csiro.au/collectory/dataResource/show/dr172
If we try to modify some field: the name, the url.., and we try to update the resource, the portal shows the next error message:
An unexpected error has occurred.
If this is the first time this page has appeared, try the refresh button in your browser.
If this fails, try to return to the home page and start again.
If this page is still displayed, please report the incident to ALA support. Click here to email ALA support.
The following is useful information that helps us discover what has happened. Please copy it into emails requesting support.
You might also like to expand the more detailed information by clicking on 'Show stack trace' and copying that text to us as well.
Thanks for your patience. Error 500: Executing action [updateBase] of controller [au.org.ala.collectory.DataResourceController] caused exception: Runtime error executing action Servlet: grails URI: /collectory/grails/dataResource/updateBase.dispatch Exception Message: No signature of method: static au.org.ala.collectory.BaseCommand.get() is applicable for argument types: (java.lang.String) values: [173] Possible solutions: getAt(java.lang.String), getId(), grep(), grep(java.lang.Object), wait(), any() Caused by: No signature of method: static au.org.ala.collectory.BaseCommand.get() is applicable for argument types: (java.lang.String) values: [173] Possible solutions: getAt(java.lang.String), getId(), grep(), grep(java.lang.Object), wait(), any() Class: Unknown At Line: [-1] Code Snippet: Show stack trace Stack Trace
groovy.lang.MissingMethodException: No signature of method: static au.org.ala.collectory.BaseCommand.get() is applicable for argument types: (java.lang.String) values: [173] Possible solutions: getAt(java.lang.String), getId(), grep(), grep(java.lang.Object), wait(), any()
atgrails.plugin.cache.web.filter.PageFragmentCachingFilter.doFilter(PageFragmentCachingFilter.java:195)
atgrails.plugin.cache.web.filter.AbstractFilter.doFilter(AbstractFilter.java:63)
at au.org.ala.cas.client.UriFilter.doFilter(UriFilter.java:200)at au.org.ala.cas.client.UriFilter.doFilter(UriFilter.java:200)at au.org.ala.cas.client.UriFilter.doFilter(UriFilter.java:200)
Kind regards. Santi.
Santiago Martínez de la Riva Vivanco GBIF.ES, Unidad de Coordinación Real Jardín Botánico CSIC Plaza de Murillo, 2 28014 Madrid, Spain Tel: +34 91 4293917 x 273 - sama@gbif.es - www.gbif.es - https://twitter.com/smr_sama
Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal .
.
-----BEGIN PGP SIGNATURE----- Version: GnuPG v2.0.22 (MingW32) Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/
iQEcBAEBAgAGBQJTWgS8AAoJEMV2/tf+QnQDAMUIAI5VtGCqqRlPgptnGUvFkxHt Qv7bSqQbX2zAv0zY39Zw+KgMgjRKOsaPfps7JfI3ENLS2NdPnqw7MuR2cS5AruL+ /z0ghaaTobOCyZS01GozOHTsfx3Y51YM8xmqEO0nyrRwUQLvCDYvSz3JyewQn6P8 V8XkLXBYeHsfXDAYex9c7myX3CuSaO/3vklx+t5jr+vprItHluqih/Ml2fqBcUnh a8G5zQZ68KAviltX+opOB+k2DcG/CB4dqkiffdek1I0gZ2wjCjfXozsVw+TW/J3d jAp8maCCM+bY6aJKDqAXfpBhwa3dwkI96WR6eSRPsQlNKRHsvzHhIXnKBOCDhIM= =kG0q -----END PGP SIGNATURE----- _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal
-- Daniel Lins da Silva (Cel) 11 6144-4050 daniel.lins@gmail.com _______________________________________________ Ala-portal mailing list Ala-portal@lists.gbif.org http://lists.gbif.org/mailman/listinfo/ala-portal