biocache> load dr0 Darwin core archive loading 2014-06-20 01:48:06,589 INFO : [DataLoader] - Downloading zip file from http://192.168.15.132:8080/collectory/upload/1403239521145/dwca-ocorrencias_lobo_guara_1.zip 2014-06-20 01:48:06,612 INFO : [DataLoader] - Content-Disposition: attachment;filename=dwca-ocorrencias_lobo_guara_1.zip 2014-06-20 01:48:06,615 INFO : [DataLoader] - Downloaded. File size: 2014-06-20 01:48:06,617 INFO : [DataLoader] - Extracting ZIP /data/biocache-load/dr0.zip Extracting /data/biocache-load/dr0.zip to /data/biocache-load/dr0 Extracting to /data/biocache-load/dr0//meta.xml Extracting to /data/biocache-load/dr0//eml.xml Extracting to /data/biocache-load/dr0//occurrence.txt 2014-06-20 01:48:06,632 INFO : [DataLoader] - Archive extracted to directory: /data/biocache-load/dr0 2014-06-20 01:48:06,648 INFO : [DataLoader] - File last modified date: Fri Jun 20 01:48:06 BRT 2014 Loading archive /data/biocache-load/dr0 for resource dr0 with unique terms List(dwc:occurrenceID) stripping spaces false incremental false testing false 2014-06-20 01:48:07,398 INFO : [SolrIndexDAO] - Initialising the solr server http://192.168.15.132:8080/solr null null 2014-06-20 01:48:07,399 INFO : [SolrIndexDAO] - Initialising connection to SOLR server..... 2014-06-20 01:48:07,754 INFO : [SolrIndexDAO] - Initialising connection to SOLR server - done. 2014-06-20 01:48:07,932 INFO : [DataLoader] - The current institution codes for the data resource: Set() 2014-06-20 01:48:07,932 INFO : [DataLoader] - The current collection codes for the data resource: Set() 2014-06-20 01:48:09,883 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/15448/da7490ec-542a-4ce4-a3de-82d42c2302b0/lobo_guara.jpg 2014-06-20 01:48:19,684 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/23236/f790496d-8088-4dc4-8b21-c05beff463cf/M%C3%A4hnenwolf%20(Chrysocyon%20brachyurus)_315_B.jpg 2014-06-20 01:48:22,986 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/3941/d533d897-8d2a-436c-8d91-322a7765d99b/Chrysocyon%20brachyurus%20Maned%20wolf.jpg 2014-06-20 01:48:26,245 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/3241/cdc7c9ed-eb3a-4807-8bf2-508b2b61674f/0798.jpeg 2014-06-20 01:48:28,473 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/18584/efb97eab-0840-4900-b49e-892346a7c84c/4235657432_c40460509e.jpg 2014-06-20 01:48:30,847 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/10768/f05ce374-f616-4252-b3a4-6709e7c3e74a/Maned%20Wolf.jpg 2014-06-20 01:48:34,302 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/19839/2ba1760d-107e-4a4d-be32-81b72ca1b993/Loup_a_criniere_15.01.2011_-_225.JPG 2014-06-20 01:48:39,093 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/3101/16c3753e-138b-48a2-a606-45dd3394e399/animal_loboguara1_247_225_95.jpg 2014-06-20 01:48:40,343 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/13793/75f30058-375f-42e5-a566-25bb14664eb7/138908-004-DAC54ABC.jpg 2014-06-20 01:48:42,469 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/20590/2e00685d-c81e-4fce-b805-6bd710869128/chrysocyon_brachyurus_fd2355.jpg 2014-06-20 01:48:43,132 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/11519/60ee400e-69f8-4631-a6ca-77fdd9b58d5a/guara.jpg 2014-06-20 01:48:44,510 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/7507/ad4ee480-ca63-431a-b65c-31dffc75dc8d/tiring_weather_by_darksoul4life-d5nmy9p.jpg 2014-06-20 01:48:46,807 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/23039/15d28b1b-03e7-46ba-bed9-cfaebcc9a1f6/i-bb9a29728e13abc5d21a917c0b80d080-Chrysocyon.jpg 2014-06-20 01:48:48,921 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/13519/150ae131-bfdb-4df3-971c-448ad09f16aa/0167.jpeg 2014-06-20 01:48:50,228 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/13459/c636ffac-aed0-4a19-8341-759f4dda01d9/Caes-Selvagens-Brasileiros-Lobo-guara.jpg 2014-06-20 01:48:50,888 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/2554/c1b64cca-2c75-4735-acac-36d12a0d22a3/raposa.jpg 2014-06-20 01:48:51,949 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/21177/ddf3eaf6-55a4-4cdc-95a5-07113b7f46ea/tumblr_m06cie62q71qgzqeto1_500.jpg 2014-06-20 01:48:53,014 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/10521/26ed3ac7-5b15-412f-b6c5-f228b30f3d64/Chrysocyon.brachyurus.jpg 2014-06-20 01:48:55,741 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/3339/75fdf229-bfb9-46c9-9596-a22c70bda29c/lobo-guara.jpg 2014-06-20 01:48:58,274 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/27576/2a40070f-2b52-48c0-aac9-b94e93356356/Chrysocyon_brachyurus_-_Zoo_Frankfurt.jpg 2014-06-20 01:49:00,600 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/23229/1fcc357b-632f-4dc0-91df-b31cbdde3fc9/1022_500_380.png 2014-06-20 01:49:02,824 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/14068/4ae62e8c-34de-4af1-b57f-5c98f4a9fcb6/0799.jpeg 2014-06-20 01:49:04,438 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/17797/7c61234d-aeef-4104-aba8-d96c3821d29d/lobo-guarc3a1.jpg 2014-06-20 01:49:04,735 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/22461/f73a63a1-e361-449f-bcac-caa8e5ce5619/tumblr_m061iisXeO1qgzqeto1_500.jpg 2014-06-20 01:49:06,105 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/1895/1bc4166f-ff67-4a84-b19e-e784a310bd0d/wolf_jump.jpg 2014-06-20 01:49:07,266 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/7644/7bf3cb44-0734-4296-b8e4-14beeb01053a/jpg_Specie_arcaica_discende_da_un_antenato_dei_lupi_estinto_nel_Pleistocene_c_Giuseppe_Mazza.jpg 2014-06-20 01:49:08,017 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/9555/120185d0-86d8-4954-9aae-8c7b259af8a0/39f3123150b6018202404df8f2a11762.jpg 2014-06-20 01:49:09,789 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/17921/f28a9c71-3ba9-4a76-8597-f03a7ef3900b/037817_w_300.jpg 2014-06-20 01:49:12,281 INFO : [MediaStore] - File saved to: /data/biocache-media/dr0/26964/1b5b21fc-594a-46e6-b8db-cf37c50b8f7b/SuperStock_4168-2957.jpg 2014-06-20 01:49:12,506 INFO : [DataLoader] - Finished DwC loader. Records processed: 32 java.net.SocketTimeoutException: Read timed out at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1675) at sun.net.www.protocol.http.HttpURLConnection$6.run(HttpURLConnection.java:1673) at java.security.AccessController.doPrivileged(Native Method) at sun.net.www.protocol.http.HttpURLConnection.getChainedException(HttpURLConnection.java:1671) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1244) at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:468) at scalaj.http.Http$Request.liftedTree1$1(Http.scala:107) at scalaj.http.Http$Request.process(Http.scala:103) at scalaj.http.Http$Request.responseCode(Http.scala:120) at au.org.ala.biocache.load.DataLoader$class.updateLastChecked(DataLoader.scala:354) at au.org.ala.biocache.load.DwCALoader.updateLastChecked(DwCALoader.scala:74) at au.org.ala.biocache.load.DwCALoader.load(DwCALoader.scala:103) at au.org.ala.biocache.load.Loader.load(Loader.scala:75) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$7.apply(CMD.scala:69) at au.org.ala.biocache.cmd.CMD$$anonfun$executeCommand$7.apply(CMD.scala:69) at scala.collection.IndexedSeqOptimized$class.foreach(IndexedSeqOptimized.scala:33) at scala.collection.mutable.ArrayOps$ofRef.foreach(ArrayOps.scala:108) at au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:69) at au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22) at au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala) Caused by: java.net.SocketTimeoutException: Read timed out at java.net.SocketInputStream.socketRead0(Native Method) at java.net.SocketInputStream.read(SocketInputStream.java:152) at java.net.SocketInputStream.read(SocketInputStream.java:122) at java.io.BufferedInputStream.fill(BufferedInputStream.java:235) at java.io.BufferedInputStream.read1(BufferedInputStream.java:275) at java.io.BufferedInputStream.read(BufferedInputStream.java:334) at sun.net.www.http.HttpClient.parseHTTPHeader(HttpClient.java:687) at sun.net.www.http.HttpClient.parseHTTP(HttpClient.java:633) at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1323) at java.net.HttpURLConnection.getResponseCode(HttpURLConnection.java:468) at scalaj.http.Http$Request$$anonfun$responseCode$1.apply(Http.scala:120) at scalaj.http.Http$Request$$anonfun$responseCode$1.apply(Http.scala:120) at scalaj.http.Http$Request.liftedTree1$1(Http.scala:104) ... 13 more ------------------------------------------------------------------------------------------- biocache> process dr0 Processing dr0 incremental=false 2014-06-20 01:51:07,520 INFO : [Consumer] - Initialising thread: 0 2014-06-20 01:51:07,538 INFO : [Consumer] - Initialising thread: 1 2014-06-20 01:51:07,540 INFO : [Consumer] - Initialising thread: 2 2014-06-20 01:51:07,541 INFO : [Consumer] - Initialising thread: 3 2014-06-20 01:51:07,541 INFO : [ProcessWithActors] - Starting with dr0| endingwith dr0|~ 2014-06-20 01:51:07,542 INFO : [ProcessWithActors] - Initialised actors... 2014-06-20 01:51:07,541 INFO : [Consumer] - In thread: 0 2014-06-20 01:51:07,550 INFO : [Consumer] - In thread: 1 2014-06-20 01:51:07,550 INFO : [Consumer] - In thread: 2 2014-06-20 01:51:07,557 INFO : [Consumer] - In thread: 3 2014-06-20 01:51:07,639 INFO : [ProcessWithActors] - First rowKey processed: dr0|null 2014-06-20 01:51:07,650 INFO : [ProcessWithActors] - Last row key processed: dr0|null 2014-06-20 01:51:07,660 INFO : [ProcessWithActors] - Finished. 2014-06-20 01:51:07,662 INFO : [Consumer] - Killing (Actor.act) thread: 1 2014-06-20 01:51:07,663 INFO : [Consumer] - Killing (Actor.act) thread: 2 2014-06-20 01:51:07,664 INFO : [Consumer] - Killing (Actor.act) thread: 3 2014-06-20 01:51:07,671 INFO : [AttributionDAO] - Calling web service for dr0 2014-06-20 01:51:07,787 INFO : [AttributionDAO] - Looking up collectory web service for ICMBIO|PARNASO Jun 20, 2014 1:51:08 AM org.geotools.referencing.factory.epsg.ThreadedEpsgFactory INFO: Setting the EPSG factory org.geotools.referencing.factory.epsg.DefaultFactory to a 1800000ms timeout Jun 20, 2014 1:51:08 AM org.geotools.referencing.factory.epsg.ThreadedEpsgFactory INFO: Setting the EPSG factory org.geotools.referencing.factory.epsg.ThreadedHsqlEpsgFactory to a 1800000ms timeout Jun 20, 2014 1:51:08 AM org.geotools.referencing.factory.epsg.ThreadedHsqlEpsgFactory createDataSource INFO: Building new data source for org.geotools.referencing.factory.epsg.ThreadedHsqlEpsgFactory Jun 20, 2014 1:51:08 AM org.geotools.referencing.factory.epsg.ThreadedHsqlEpsgFactory createBackingStore INFO: Building backing store for org.geotools.referencing.factory.epsg.ThreadedHsqlEpsgFactory 2014-06-20 01:51:20,505 WARN : [ALANameSearcher] - Unable to parse Abaca bunchy top (Babuvirus). Name of type virus unparsable: Abaca bunchy top (Babuvirus) 2014-06-20 01:51:20,509 WARN : [ALANameSearcher] - Unable to parse Abaca mosaic, sugarcane mosaic (Potyvirus). Name of type virus unparsable: Abaca mosaic, sugarcane mosaic (Potyvirus) 2014-06-20 01:51:21,210 WARN : [ALANameSearcher] - Unable to parse Acute bee paralysis (Cripavirus). Name of type virus unparsable: Acute bee paralysis (Cripavirus) 2014-06-20 01:51:21,255 WARN : [ALANameSearcher] - Unable to parse Agropyron mosaic (Rymovirus). Name of type virus unparsable: Agropyron mosaic (Rymovirus) 2014-06-20 01:51:21,289 WARN : [ALANameSearcher] - Unable to parse Alphacrytovirus vicia. Name of type virus unparsable: Alphacrytovirus vicia 2014-06-20 01:51:21,334 WARN : [ALANameSearcher] - Unable to parse American plum line pattern (APLPV, Ilaravirus). Name of type virus unparsable: American plum line pattern (APLPV, Ilaravirus) 2014-06-20 01:51:21,525 WARN : [ALANameSearcher] - Unable to parse Apis iridescent (Iridovirus). Name of type virus unparsable: Apis iridescent (Iridovirus) 2014-06-20 01:51:21,546 WARN : [ALANameSearcher] - Unable to parse Apricot ring pox (Unassigned). Name of type blacklisted unparsable: Apricot ring pox (Unassigned) 2014-06-20 01:51:21,549 WARN : [ALANameSearcher] - Unable to parse Arabis mosaic (Nepovirus). Name of type virus unparsable: Arabis mosaic (Nepovirus) 2014-06-20 01:51:21,623 WARN : [ALANameSearcher] - Unable to parse Artichoke Italian latent (Nepovirus). Name of type virus unparsable: Artichoke Italian latent (Nepovirus) 2014-06-20 01:51:21,640 WARN : [ALANameSearcher] - Unable to parse Asparagus (Ilarvirus). Name of type virus unparsable: Asparagus (Ilarvirus) 2014-06-20 01:51:21,641 WARN : [ALANameSearcher] - Unable to parse Asparagus (Potyvirus). Name of type virus unparsable: Asparagus (Potyvirus) 2014-06-20 01:51:21,713 WARN : [ALANameSearcher] - Unable to parse Australian bat lyssavirus. Name of type virus unparsable: Australian bat lyssavirus 2014-06-20 01:51:21,870 WARN : [ALANameSearcher] - Unable to parse Banana bract mosaic (Potyvirus). Name of type virus unparsable: Banana bract mosaic (Potyvirus) 2014-06-20 01:51:21,871 WARN : [ALANameSearcher] - Unable to parse Banana bunchy top (Babuvirus). Name of type virus unparsable: Banana bunchy top (Babuvirus) 2014-06-20 01:51:21,997 WARN : [ALANameSearcher] - Unable to parse Barley mild mosaic (Bymovirus). Name of type virus unparsable: Barley mild mosaic (Bymovirus) 2014-06-20 01:51:22,002 WARN : [ALANameSearcher] - Unable to parse Barley stripe mosaic (Hordeivirus). Name of type virus unparsable: Barley stripe mosaic (Hordeivirus) 2014-06-20 01:51:22,003 WARN : [ALANameSearcher] - Unable to parse Barley yellow mosaic (Bymovirus). Name of type virus unparsable: Barley yellow mosaic (Bymovirus) 2014-06-20 01:51:22,003 WARN : [ALANameSearcher] - Unable to parse Barley yellow striate mosaic (Cytorhabdovirus). Name of type virus unparsable: Barley yellow striate mosaic (Cytorhabdovirus) 2014-06-20 01:51:22,008 WARN : [ALANameSearcher] - Unable to parse Barley yellow striate mosaic (Cytorhabdovirus). Name of type virus unparsable: Barley yellow striate mosaic (Cytorhabdovirus) 2014-06-20 01:51:22,018 WARN : [ALANameSearcher] - Unable to parse Bean yellow mosaic (Potyvirus). Name of type virus unparsable: Bean yellow mosaic (Potyvirus) 2014-06-20 01:51:22,019 WARN : [ALANameSearcher] - Unable to parse Bean yellow veinbanding (Umbravirus). Name of type virus unparsable: Bean yellow veinbanding (Umbravirus) 2014-06-20 01:51:22,021 WARN : [ALANameSearcher] - Unable to parse Begomovirus cotton leaf curl. Name of type virus unparsable: Begomovirus cotton leaf curl 2014-06-20 01:51:22,038 WARN : [ALANameSearcher] - Unable to parse Bison bison X Bos taurus (more than 37.5%). Name of type hybrid unparsable: Bison bison X Bos taurus (more than 37.5%) 2014-06-20 01:51:22,039 WARN : [ALANameSearcher] - Unable to parse Black queen cell (Cripavirus). Name of type virus unparsable: Black queen cell (Cripavirus) 2014-06-20 01:51:22,044 WARN : [ALANameSearcher] - Unable to parse Blueberry leaf mottle (Nepovirus). Name of type virus unparsable: Blueberry leaf mottle (Nepovirus) 2014-06-20 01:51:22,110 WARN : [ALANameSearcher] - Unable to parse Broad bean mottle (Bromovirus). Name of type virus unparsable: Broad bean mottle (Bromovirus) 2014-06-20 01:51:22,111 WARN : [ALANameSearcher] - Unable to parse Broad bean necrosis (Furovirus). Name of type virus unparsable: Broad bean necrosis (Furovirus) 2014-06-20 01:51:22,111 WARN : [ALANameSearcher] - Unable to parse Broad bean severe chlorosis (Unclassified). Name of type blacklisted unparsable: Broad bean severe chlorosis (Unclassified) 2014-06-20 01:51:22,112 WARN : [ALANameSearcher] - Unable to parse Broad bean stain (Comovirus). Name of type virus unparsable: Broad bean stain (Comovirus) 2014-06-20 01:51:22,112 WARN : [ALANameSearcher] - Unable to parse Broad bean true mosaic (Comovirus). Name of type virus unparsable: Broad bean true mosaic (Comovirus) 2014-06-20 01:51:22,113 WARN : [ALANameSearcher] - Unable to parse Broad bean yellow vein (Cytorhabdovirus). Name of type virus unparsable: Broad bean yellow vein (Cytorhabdovirus) 2014-06-20 01:51:22,151 WARN : [ALANameSearcher] - Unable to parse CLCuD complex (Begomoviruses). Name of type virus unparsable: CLCuD complex (Begomoviruses) 2014-06-20 01:51:22,396 WARN : [ALANameSearcher] - Unable to parse Canis lupus dingo x Canis lupus familiaris. Name of type hybrid unparsable: Canis lupus dingo x Canis lupus familiaris 2014-06-20 01:51:22,428 WARN : [ALANameSearcher] - Unable to parse Carrot mosaic (Potyvirus). Name of type virus unparsable: Carrot mosaic (Potyvirus) 2014-06-20 01:51:22,431 WARN : [ALANameSearcher] - Unable to parse Carrot thin leaf (Potyvirus). Name of type virus unparsable: Carrot thin leaf (Potyvirus) 2014-06-20 01:51:22,555 WARN : [ALANameSearcher] - Unable to parse Cherry A (Capillovirus). Name of type virus unparsable: Cherry A (Capillovirus) 2014-06-20 01:51:22,556 WARN : [ALANameSearcher] - Unable to parse Cherry leaf roll (Nepovirus). Name of type virus unparsable: Cherry leaf roll (Nepovirus) 2014-06-20 01:51:22,556 WARN : [ALANameSearcher] - Unable to parse Cherry leaf roll (Nepovirus) (exotic strains). Name of type virus unparsable: Cherry leaf roll (Nepovirus) (exotic strains) 2014-06-20 01:51:22,557 WARN : [ALANameSearcher] - Unable to parse Cherry leafroll (Nepovirus). Name of type virus unparsable: Cherry leafroll (Nepovirus) 2014-06-20 01:51:22,557 WARN : [ALANameSearcher] - Unable to parse Cherry mottle leaf (Trichovirus). Name of type virus unparsable: Cherry mottle leaf (Trichovirus) 2014-06-20 01:51:22,559 WARN : [ALANameSearcher] - Unable to parse Cherry A (CVA, Capillovirus). Name of type virus unparsable: Cherry A (CVA, Capillovirus) 2014-06-20 01:51:22,559 WARN : [ALANameSearcher] - Unable to parse Chickpea bushy dwarf (Potyvirus). Name of type virus unparsable: Chickpea bushy dwarf (Potyvirus) 2014-06-20 01:51:22,561 WARN : [ALANameSearcher] - Unable to parse Chickpea chlorotic dwarf (Geminivirus). Name of type virus unparsable: Chickpea chlorotic dwarf (Geminivirus) 2014-06-20 01:51:22,561 WARN : [ALANameSearcher] - Unable to parse Chickpea chlorotic stunt (Polerovirus). Name of type virus unparsable: Chickpea chlorotic stunt (Polerovirus) 2014-06-20 01:51:22,562 WARN : [ALANameSearcher] - Unable to parse Chickpea distortion mosaic (Potyvirus). Name of type virus unparsable: Chickpea distortion mosaic (Potyvirus) 2014-06-20 01:51:22,562 WARN : [ALANameSearcher] - Unable to parse Chickpea filiform (Potyvirus). Name of type virus unparsable: Chickpea filiform (Potyvirus) 2014-06-20 01:51:22,611 WARN : [ALANameSearcher] - Unable to parse Chrysanthemum stem necrosis (Tospovirus). Name of type virus unparsable: Chrysanthemum stem necrosis (Tospovirus) 2014-06-20 01:51:22,622 WARN : [ALANameSearcher] - Unable to parse Citrus leprosies rhabdovirus. Name of type virus unparsable: Citrus leprosies rhabdovirus 2014-06-20 01:51:22,623 WARN : [ALANameSearcher] - Unable to parse Citrus tristeza (Closterovirus) (mandarin stem-pitting strain). Name of type virus unparsable: Citrus tristeza (Closterovirus) (mandarin stem-pitting strain) 2014-06-20 01:51:22,623 WARN : [ALANameSearcher] - Unable to parse Citrus tristeza (Closterovirus) (sweet orange stem-pitting strain). Name of type virus unparsable: Citrus tristeza (Closterovirus) (sweet orange stem-pitting strain) 2014-06-20 01:51:22,623 WARN : [ALANameSearcher] - Unable to parse Citrus yellow mosaic (Badnavirus). Name of type virus unparsable: Citrus yellow mosaic (Badnavirus) 2014-06-20 01:51:22,637 WARN : [ALANameSearcher] - Unable to parse Closteroviruses. Name of type virus unparsable: Closteroviruses 2014-06-20 01:51:22,637 WARN : [ALANameSearcher] - Unable to parse Clover yellow mosaic (Potexvirus). Name of type virus unparsable: Clover yellow mosaic (Potexvirus) 2014-06-20 01:51:22,657 WARN : [ALANameSearcher] - Unable to parse Comoviridae: Nepovirus. Name of type virus unparsable: Comoviridae: Nepovirus 2014-06-20 01:51:22,658 WARN : [ALANameSearcher] - Unable to parse Complex infection of Groundnut rosette (Umbravirus), Groundnut assister (Luteovirus), Chlorotic rosette, green rosette & mosaic rosette. Name of type virus unparsable: Complex infection of Groundnut rosette (Umbravirus), Groundnut assister (Luteovirus), Chlorotic rosette, green rosette & mosaic rosette 2014-06-20 01:51:22,713 WARN : [ALANameSearcher] - Unable to parse Cotton leaf curl (Begomovirus). Name of type virus unparsable: Cotton leaf curl (Begomovirus) 2014-06-20 01:51:22,714 WARN : [ALANameSearcher] - Unable to parse Cowpea mild mottle (Carlavirus). Name of type virus unparsable: Cowpea mild mottle (Carlavirus) 2014-06-20 01:51:22,725 WARN : [ALANameSearcher] - Unable to parse Criniviruses. Name of type virus unparsable: Criniviruses 2014-06-20 01:51:22,822 WARN : [ALANameSearcher] - Unable to parse Cucurbit aphid-borne yellow (Polerovirus). Name of type virus unparsable: Cucurbit aphid-borne yellow (Polerovirus) 2014-06-20 01:51:22,832 WARN : [ALANameSearcher] - Unable to parse Cucurbit yellow stunting disorder (Crinivirus). Name of type virus unparsable: Cucurbit yellow stunting disorder (Crinivirus) 2014-06-20 01:51:22,877 WARN : [ALANameSearcher] - Unable to parse Cycas media subsp. banksii x C.platyphylla. Name of type hybrid unparsable: Cycas media subsp. banksii x C.platyphylla 2014-06-20 01:51:22,910 WARN : [ALANameSearcher] - Unable to parse Cynodon chlorotic streak (Nucleorhabdovirus) (CCSV). Name of type virus unparsable: Cynodon chlorotic streak (Nucleorhabdovirus) (CCSV) 2014-06-20 01:51:23,274 WARN : [ALANameSearcher] - Unable to parse Deformed wing (Iflavirus). Name of type virus unparsable: Deformed wing (Iflavirus) 2014-06-20 01:51:23,293 WARN : [ALANameSearcher] - Unable to parse Dendrobium kingianum x D.speciosum. Name of type hybrid unparsable: Dendrobium kingianum x D.speciosum 2014-06-20 01:51:23,301 WARN : [ALANameSearcher] - Unable to parse Dendrobium speciosum subsp. grandiflorum x D.speciosum subsp. hillii. Name of type hybrid unparsable: Dendrobium speciosum subsp. grandiflorum x D.speciosum subsp. hillii 2014-06-20 01:51:23,378 WARN : [ALANameSearcher] - Unable to parse Diuris alba x D.chrysantha. Name of type hybrid unparsable: Diuris alba x D.chrysantha 2014-06-20 01:51:23,547 WARN : [ALANameSearcher] - Unable to parse Eucalyptus absita x loxophleba. Name of type hybrid unparsable: Eucalyptus absita x loxophleba 2014-06-20 01:51:23,552 WARN : [ALANameSearcher] - Unable to parse Eucalyptus buprestium x erectifolia. Name of type hybrid unparsable: Eucalyptus buprestium x erectifolia 2014-06-20 01:51:23,553 WARN : [ALANameSearcher] - Unable to parse Eucalyptus buprestium x ligulata. Name of type hybrid unparsable: Eucalyptus buprestium x ligulata 2014-06-20 01:51:23,553 WARN : [ALANameSearcher] - Unable to parse Eucalyptus buprestium x marginata. Name of type hybrid unparsable: Eucalyptus buprestium x marginata 2014-06-20 01:51:23,553 WARN : [ALANameSearcher] - Unable to parse Eucalyptus buprestium x staeri. Name of type hybrid unparsable: Eucalyptus buprestium x staeri 2014-06-20 01:51:23,560 WARN : [ALANameSearcher] - Unable to parse Eucalyptus dielsii x platypus. Name of type hybrid unparsable: Eucalyptus dielsii x platypus 2014-06-20 01:51:23,572 WARN : [ALANameSearcher] - Unable to parse Eucalyptus loxophleba x wandoo. Name of type hybrid unparsable: Eucalyptus loxophleba x wandoo 2014-06-20 01:51:23,573 WARN : [ALANameSearcher] - Unable to parse Eucalyptus macrocarpa x pyriformis. Name of type hybrid unparsable: Eucalyptus macrocarpa x pyriformis 2014-06-20 01:51:23,574 WARN : [ALANameSearcher] - Unable to parse Eucalyptus marginata x megacarpa. Name of type hybrid unparsable: Eucalyptus marginata x megacarpa 2014-06-20 01:51:23,574 WARN : [ALANameSearcher] - Unable to parse Eucalyptus marginata x pachyloma. Name of type hybrid unparsable: Eucalyptus marginata x pachyloma 2014-06-20 01:51:23,583 WARN : [ALANameSearcher] - Unable to parse Eucalyptus preissiana x staeri. Name of type hybrid unparsable: Eucalyptus preissiana x staeri 2014-06-20 01:51:23,586 WARN : [ALANameSearcher] - Unable to parse Eucalyptus rhodantha var. x petiolaris. Name of type hybrid unparsable: Eucalyptus rhodantha var. x petiolaris 2014-06-20 01:51:23,630 WARN : [ALANameSearcher] - Unable to parse Faba bean necrotic yellows (Nanovirus). Name of type virus unparsable: Faba bean necrotic yellows (Nanovirus) 2014-06-20 01:51:23,635 WARN : [ALANameSearcher] - Unable to parse Fiji Disease Virus (Fijivirus). Name of type virus unparsable: Fiji Disease Virus (Fijivirus) 2014-06-20 01:51:23,647 WARN : [ALANameSearcher] - Unable to parse Flexiviridae: Potato Virus S. Name of type virus unparsable: Flexiviridae: Potato Virus S 2014-06-20 01:51:23,649 WARN : [ALANameSearcher] - Unable to parse Foxtail mosaic (Potexvirus). Name of type virus unparsable: Foxtail mosaic (Potexvirus) 2014-06-20 01:51:23,713 WARN : [ALANameSearcher] - Unable to parse Geminiviruses. Name of type virus unparsable: Geminiviruses 2014-06-20 01:51:23,729 WARN : [ALANameSearcher] - Unable to parse Ginger chlorotic fleck Sobemovirus. Name of type virus unparsable: Ginger chlorotic fleck Sobemovirus 2014-06-20 01:51:23,772 WARN : [ALANameSearcher] - Unable to parse Grapevine B vitivirus. Name of type virus unparsable: Grapevine B vitivirus 2014-06-20 01:51:23,773 WARN : [ALANameSearcher] - Unable to parse Grapevine Bulgarian latent (Nepovirus). Name of type virus unparsable: Grapevine Bulgarian latent (Nepovirus) 2014-06-20 01:51:23,773 WARN : [ALANameSearcher] - Unable to parse Grapevine Joannes Seyve (Nepovirus). Name of type virus unparsable: Grapevine Joannes Seyve (Nepovirus) 2014-06-20 01:51:23,774 WARN : [ALANameSearcher] - Unable to parse Grapevine Tunisian ringspot (Nepovirus). Name of type virus unparsable: Grapevine Tunisian ringspot (Nepovirus) 2014-06-20 01:51:23,774 WARN : [ALANameSearcher] - Unable to parse Grapevine ajinashika (Luteovirus). Name of type virus unparsable: Grapevine ajinashika (Luteovirus) 2014-06-20 01:51:23,775 WARN : [ALANameSearcher] - Unable to parse Grapevine asteroid mosaic associated (Marafivirus). Name of type virus unparsable: Grapevine asteroid mosaic associated (Marafivirus) 2014-06-20 01:51:23,775 WARN : [ALANameSearcher] - Unable to parse Grapevine chrome mosaic (Nepovirus). Name of type virus unparsable: Grapevine chrome mosaic (Nepovirus) 2014-06-20 01:51:23,776 WARN : [ALANameSearcher] - Unable to parse Grapevine inner necrosis (Trichovirus). Name of type virus unparsable: Grapevine inner necrosis (Trichovirus) 2014-06-20 01:51:23,777 WARN : [ALANameSearcher] - Unable to parse Grapevine D (Vitivirus). Name of type virus unparsable: Grapevine D (Vitivirus) 2014-06-20 01:51:23,777 WARN : [ALANameSearcher] - Unable to parse Grapevine yellow dwarf (Luteovirus). Name of type virus unparsable: Grapevine yellow dwarf (Luteovirus) 2014-06-20 01:51:23,778 WARN : [ALANameSearcher] - Unable to parse Grapevine yellow vein mosaic (Nepovirus). Name of type virus unparsable: Grapevine yellow vein mosaic (Nepovirus) 2014-06-20 01:51:23,833 WARN : [ALANameSearcher] - Unable to parse Guinea grass mosaic (Potyvirus) (GGMV). Name of type virus unparsable: Guinea grass mosaic (Potyvirus) (GGMV) 2014-06-20 01:51:23,895 WARN : [ALANameSearcher] - Unable to parse Hellebore Net Necrosis Virus. Name of type virus unparsable: Hellebore Net Necrosis Virus 2014-06-20 01:51:23,962 WARN : [ALANameSearcher] - Unable to parse High plains tenuivirus. Name of type virus unparsable: High plains tenuivirus 2014-06-20 01:51:23,963 WARN : [ALANameSearcher] - Unable to parse High plains (Unassigned). Name of type blacklisted unparsable: High plains (Unassigned) 2014-06-20 01:51:24,029 WARN : [ALANameSearcher] - Unable to parse Impatiens necrotic spot (Tospovirus). Name of type virus unparsable: Impatiens necrotic spot (Tospovirus) 2014-06-20 01:51:24,147 WARN : [ALANameSearcher] - Unable to parse Lettuce infectious yellows (Closterovirus). Name of type virus unparsable: Lettuce infectious yellows (Closterovirus) 2014-06-20 01:51:24,148 WARN : [ALANameSearcher] - Unable to parse Lettuce infectious yellows (Crinivirus). Name of type virus unparsable: Lettuce infectious yellows (Crinivirus) 2014-06-20 01:51:24,218 WARN : [ALANameSearcher] - Unable to parse Little cherry and (Unassigned). Name of type blacklisted unparsable: Little cherry and (Unassigned) 2014-06-20 01:51:24,219 WARN : [ALANameSearcher] - Unable to parse Little cherry and (Unassigned Closteroviridae). Name of type blacklisted unparsable: Little cherry and (Unassigned Closteroviridae) 2014-06-20 01:51:24,230 WARN : [ALANameSearcher] - Unable to parse Luteovirus (suspected). Name of type virus unparsable: Luteovirus (suspected) 2014-06-20 01:51:24,264 WARN : [ALANameSearcher] - Unable to parse Macrozamia fearnsidei x M.moorei. Name of type hybrid unparsable: Macrozamia fearnsidei x M.moorei 2014-06-20 01:51:24,268 WARN : [ALANameSearcher] - Unable to parse Macrozamia lomandroides x M.pauli-guilielmi. Name of type hybrid unparsable: Macrozamia lomandroides x M.pauli-guilielmi 2014-06-20 01:51:24,269 WARN : [ALANameSearcher] - Unable to parse Macrozamia lucida x M.macleayi. Name of type hybrid unparsable: Macrozamia lucida x M.macleayi 2014-06-20 01:51:24,284 WARN : [ALANameSearcher] - Unable to parse Maize chlorotic dwarf (Waikavirus) (MCDV). Name of type virus unparsable: Maize chlorotic dwarf (Waikavirus) (MCDV) 2014-06-20 01:51:24,285 WARN : [ALANameSearcher] - Unable to parse Maize chlorotic mottle (Machlomovirus). Name of type virus unparsable: Maize chlorotic mottle (Machlomovirus) 2014-06-20 01:51:24,285 WARN : [ALANameSearcher] - Unable to parse Maize dwarf mosaic (Potyvirus). Name of type virus unparsable: Maize dwarf mosaic (Potyvirus) 2014-06-20 01:51:24,286 WARN : [ALANameSearcher] - Unable to parse Maize eyespot (Unclassified). Name of type blacklisted unparsable: Maize eyespot (Unclassified) 2014-06-20 01:51:24,287 WARN : [ALANameSearcher] - Unable to parse Maize gooseneck stripe (Unclassified). Name of type blacklisted unparsable: Maize gooseneck stripe (Unclassified) 2014-06-20 01:51:24,287 WARN : [ALANameSearcher] - Unable to parse Maize iranian mosaic (Nucleo-rhabdovirus). Name of type virus unparsable: Maize iranian mosaic (Nucleo-rhabdovirus) 2014-06-20 01:51:24,288 WARN : [ALANameSearcher] - Unable to parse Maize line (unclassified). Name of type blacklisted unparsable: Maize line (unclassified) 2014-06-20 01:51:24,288 WARN : [ALANameSearcher] - Unable to parse Maize mosaic (Nucleo-rhabdovirus). Name of type virus unparsable: Maize mosaic (Nucleo-rhabdovirus) 2014-06-20 01:51:24,291 WARN : [ALANameSearcher] - Unable to parse Maize mottle (Begomovirus) syn. Chlorotic stunt. Name of type virus unparsable: Maize mottle (Begomovirus) syn. Chlorotic stunt 2014-06-20 01:51:24,291 WARN : [ALANameSearcher] - Unable to parse Maize raya gruesa (unclassified). Name of type blacklisted unparsable: Maize raya gruesa (unclassified) 2014-06-20 01:51:24,292 WARN : [ALANameSearcher] - Unable to parse Maize rayado fino (Marafivirus). Name of type virus unparsable: Maize rayado fino (Marafivirus) 2014-06-20 01:51:24,293 WARN : [ALANameSearcher] - Unable to parse Maize rough dwarf (Fijivirus). Name of type virus unparsable: Maize rough dwarf (Fijivirus) 2014-06-20 01:51:24,293 WARN : [ALANameSearcher] - Unable to parse Maize streak (Mastrevirus). Name of type virus unparsable: Maize streak (Mastrevirus) 2014-06-20 01:51:24,294 WARN : [ALANameSearcher] - Unable to parse Maize streak (Monogeminivirus) (MSV). Name of type virus unparsable: Maize streak (Monogeminivirus) (MSV) 2014-06-20 01:51:24,294 WARN : [ALANameSearcher] - Unable to parse Maize white line mosaic (Unclassified). Name of type blacklisted unparsable: Maize white line mosaic (Unclassified) 2014-06-20 01:51:24,405 WARN : [ALANameSearcher] - Unable to parse Melon yellow spot (Tospovirus). Name of type virus unparsable: Melon yellow spot (Tospovirus) 2014-06-20 01:51:24,496 WARN : [ALANameSearcher] - Unable to parse Milk vetch dwarf nanovirus. Name of type virus unparsable: Milk vetch dwarf nanovirus 2014-06-20 01:51:24,497 WARN : [ALANameSearcher] - Unable to parse Milk vetch dwarf (Nanovirus). Name of type virus unparsable: Milk vetch dwarf (Nanovirus) 2014-06-20 01:51:24,621 WARN : [ALANameSearcher] - Unable to parse Myrobalan latent ringspot (Nepovirus). Name of type virus unparsable: Myrobalan latent ringspot (Nepovirus) 2014-06-20 01:51:24,665 WARN : [ALANameSearcher] - Unable to parse Nepovirus cherry leaf roll. Name of type virus unparsable: Nepovirus cherry leaf roll 2014-06-20 01:51:24,670 WARN : [ALANameSearcher] - Unable to parse Nepoviruses. Name of type virus unparsable: Nepoviruses 2014-06-20 01:51:24,670 WARN : [ALANameSearcher] - Unable to parse Nepoviruses other than ArMV. Name of type virus unparsable: Nepoviruses other than ArMV 2014-06-20 01:51:24,738 WARN : [ALANameSearcher] - Unable to parse Oat blue dwarf (Marafivirus). Name of type virus unparsable: Oat blue dwarf (Marafivirus) 2014-06-20 01:51:24,744 WARN : [ALANameSearcher] - Unable to parse Oat chlorotic stunt (Avenavirus). Name of type virus unparsable: Oat chlorotic stunt (Avenavirus) 2014-06-20 01:51:24,744 WARN : [ALANameSearcher] - Unable to parse Oat golden stripe (Furovirus). Name of type virus unparsable: Oat golden stripe (Furovirus) 2014-06-20 01:51:24,745 WARN : [ALANameSearcher] - Unable to parse Oat mosaic (Potyvirus). Name of type virus unparsable: Oat mosaic (Potyvirus) 2014-06-20 01:51:24,745 WARN : [ALANameSearcher] - Unable to parse Oat sterile dwarf (Fujivirus). Name of type virus unparsable: Oat sterile dwarf (Fujivirus) 2014-06-20 01:51:24,776 WARN : [ALANameSearcher] - Unable to parse Olive latent ringspot (Nepovirus). Name of type virus unparsable: Olive latent ringspot (Nepovirus) 2014-06-20 01:51:24,785 WARN : [ALANameSearcher] - Unable to parse Olive leaf yellowing associated (Closterovirus). Name of type virus unparsable: Olive leaf yellowing associated (Closterovirus) 2014-06-20 01:51:24,785 WARN : [ALANameSearcher] - Unable to parse Olive semi latent (Undetermined). Name of type blacklisted unparsable: Olive semi latent (Undetermined) 2014-06-20 01:51:24,786 WARN : [ALANameSearcher] - Unable to parse Olive vein yellowing-associated (Potexvirus). Name of type virus unparsable: Olive vein yellowing-associated (Potexvirus) 2014-06-20 01:51:24,787 WARN : [ALANameSearcher] - Unable to parse Onion mite-borne latent potexvirus. Name of type virus unparsable: Onion mite-borne latent potexvirus 2014-06-20 01:51:24,846 WARN : [ALANameSearcher] - Unable to parse Papaya apical necrosis rhabdovirus. Name of type virus unparsable: Papaya apical necrosis rhabdovirus 2014-06-20 01:51:24,849 WARN : [ALANameSearcher] - Unable to parse Papaya leaf curl (several Begomoviruses can cause this disease). Name of type virus unparsable: Papaya leaf curl (several Begomoviruses can cause this disease) 2014-06-20 01:51:24,850 WARN : [ALANameSearcher] - Unable to parse Papaya leaf medium distortion mosaic (Potyvirus). Name of type virus unparsable: Papaya leaf medium distortion mosaic (Potyvirus) 2014-06-20 01:51:24,851 WARN : [ALANameSearcher] - Unable to parse Papaya mosaic (Potexvirus). Name of type virus unparsable: Papaya mosaic (Potexvirus) 2014-06-20 01:51:24,851 WARN : [ALANameSearcher] - Unable to parse Papaya ringspot Type P (Potyvirus). Name of type virus unparsable: Papaya ringspot Type P (Potyvirus) 2014-06-20 01:51:24,866 WARN : [ALANameSearcher] - Unable to parse Passionfruit Sri Lankan mottle potyvirus. Name of type virus unparsable: Passionfruit Sri Lankan mottle potyvirus 2014-06-20 01:51:24,868 WARN : [ALANameSearcher] - Unable to parse Passionfruit vein clearing rhabdovirus. Name of type virus unparsable: Passionfruit vein clearing rhabdovirus 2014-06-20 01:51:24,869 WARN : [ALANameSearcher] - Unable to parse Pea early browning (Tobravirus). Name of type virus unparsable: Pea early browning (Tobravirus) 2014-06-20 01:51:24,870 WARN : [ALANameSearcher] - Unable to parse Pea enation mosaic (Enamovirus + Umbravirus). Name of type virus unparsable: Pea enation mosaic (Enamovirus + Umbravirus) 2014-06-20 01:51:24,870 WARN : [ALANameSearcher] - Unable to parse Pea mild mosaic (Comovirus). Name of type virus unparsable: Pea mild mosaic (Comovirus) 2014-06-20 01:51:24,871 WARN : [ALANameSearcher] - Unable to parse Pea stem necrosis (Unclassified). Name of type blacklisted unparsable: Pea stem necrosis (Unclassified) 2014-06-20 01:51:24,871 WARN : [ALANameSearcher] - Unable to parse Pea streak (Carlavirus). Name of type virus unparsable: Pea streak (Carlavirus) 2014-06-20 01:51:24,871 WARN : [ALANameSearcher] - Unable to parse Pea stunt (Cucumovirus). Name of type virus unparsable: Pea stunt (Cucumovirus) 2014-06-20 01:51:24,873 WARN : [ALANameSearcher] - Unable to parse Peach enation (Nepovirus). Name of type virus unparsable: Peach enation (Nepovirus) 2014-06-20 01:51:24,875 WARN : [ALANameSearcher] - Unable to parse Peach rosette mosaic (Nepovirus). Name of type virus unparsable: Peach rosette mosaic (Nepovirus) 2014-06-20 01:51:24,875 WARN : [ALANameSearcher] - Unable to parse Peach rosette mosaic (Nepovirus). Name of type virus unparsable: Peach rosette mosaic (Nepovirus) 2014-06-20 01:51:24,876 WARN : [ALANameSearcher] - Unable to parse Peanut Clump Virus. Name of type virus unparsable: Peanut Clump Virus 2014-06-20 01:51:24,877 WARN : [ALANameSearcher] - Unable to parse Peanut clump (Pecluvirus). Name of type virus unparsable: Peanut clump (Pecluvirus) 2014-06-20 01:51:24,877 WARN : [ALANameSearcher] - Unable to parse Peanut stripe (Potyvirus). Name of type virus unparsable: Peanut stripe (Potyvirus) 2014-06-20 01:51:24,878 WARN : [ALANameSearcher] - Unable to parse Peanut stunt (Cucumovirus). Name of type virus unparsable: Peanut stunt (Cucumovirus) 2014-06-20 01:51:24,879 WARN : [ALANameSearcher] - Unable to parse Pelargonium flower break (Carmovirus). Name of type virus unparsable: Pelargonium flower break (Carmovirus) 2014-06-20 01:51:24,884 WARN : [ALANameSearcher] - Unable to parse Pepino mosaic potexvirus. Name of type virus unparsable: Pepino mosaic potexvirus 2014-06-20 01:51:24,885 WARN : [ALANameSearcher] - Unable to parse Pepino mosaic (Potexvirus). Name of type virus unparsable: Pepino mosaic (Potexvirus) 2014-06-20 01:51:24,906 WARN : [ALANameSearcher] - Unable to parse Petunia asteroid mosaic (Tombusvirus). Name of type virus unparsable: Petunia asteroid mosaic (Tombusvirus) 2014-06-20 01:51:24,998 WARN : [ALANameSearcher] - Unable to parse Plantago mottle (Tymovirus). Name of type virus unparsable: Plantago mottle (Tymovirus) 2014-06-20 01:51:25,018 WARN : [ALANameSearcher] - Unable to parse Plum pox potyvirus. Name of type virus unparsable: Plum pox potyvirus 2014-06-20 01:51:25,019 WARN : [ALANameSearcher] - Unable to parse Plum pox (Potyvirus). Name of type virus unparsable: Plum pox (Potyvirus) 2014-06-20 01:51:25,036 WARN : [ALANameSearcher] - Unable to parse Potyviridae: Potato A potyvirus. Potato A potyvirus. Name of type virus unparsable: Potyviridae: Potato A potyvirus. Potato A potyvirus 2014-06-20 01:51:25,037 WARN : [ALANameSearcher] - Unable to parse Potyviridae: Potato Virus V. Name of type virus unparsable: Potyviridae: Potato Virus V 2014-06-20 01:51:25,037 WARN : [ALANameSearcher] - Unable to parse Potyviridae: Potato Virus Y. There are general strain groups – PVYO, PVYN, PVYC (and some others that do not fit into these groups).. Name of type virus unparsable: Potyviridae: Potato Virus Y. There are general strain groups – PVYO, PVYN, PVYC (and some others that do not fit into these groups). 2014-06-20 01:51:25,061 WARN : [ALANameSearcher] - Unable to parse Prosopis glandulosa Torr. x Prosopis velutina Wooton. Name of type hybrid unparsable: Prosopis glandulosa Torr. x Prosopis velutina Wooton 2014-06-20 01:51:25,153 WARN : [ALANameSearcher] - Unable to parse Raboviruses. Name of type virus unparsable: Raboviruses 2014-06-20 01:51:25,154 WARN : [ALANameSearcher] - Unable to parse Radish mosaic (Comovirus). Name of type virus unparsable: Radish mosaic (Comovirus) 2014-06-20 01:51:25,161 WARN : [ALANameSearcher] - Unable to parse Raspberry ringspot (Nepovirus). Name of type virus unparsable: Raspberry ringspot (Nepovirus) 2014-06-20 01:51:25,161 WARN : [ALANameSearcher] - Unable to parse Raspberry ringspot (Nepovirus). Name of type virus unparsable: Raspberry ringspot (Nepovirus) 2014-06-20 01:51:25,162 WARN : [ALANameSearcher] - Unable to parse Raspberry ringspot (Nepovirus). Name of type virus unparsable: Raspberry ringspot (Nepovirus) 2014-06-20 01:51:25,165 WARN : [ALANameSearcher] - Unable to parse Red clover vein mosaic (Carlavirus). Name of type virus unparsable: Red clover vein mosaic (Carlavirus) 2014-06-20 01:51:25,167 WARN : [ALANameSearcher] - Unable to parse Reovirus. Name of type virus unparsable: Reovirus 2014-06-20 01:51:25,187 WARN : [ALANameSearcher] - Unable to parse Rice black streaked dwarf (Fijivirus). Name of type virus unparsable: Rice black streaked dwarf (Fijivirus) 2014-06-20 01:51:25,187 WARN : [ALANameSearcher] - Unable to parse Rice hoja blanca (Tenuivirus). Name of type virus unparsable: Rice hoja blanca (Tenuivirus) 2014-06-20 01:51:25,188 WARN : [ALANameSearcher] - Unable to parse Rice stripe tenuivirus. Name of type virus unparsable: Rice stripe tenuivirus 2014-06-20 01:51:25,188 WARN : [ALANameSearcher] - Unable to parse Rice stripe (Tenuivirus). Name of type virus unparsable: Rice stripe (Tenuivirus) 2014-06-20 01:51:25,195 WARN : [ALANameSearcher] - Unable to parse Roditis leaf discoloration (Carmovirus). Name of type virus unparsable: Roditis leaf discoloration (Carmovirus) 2014-06-20 01:51:25,212 WARN : [ALANameSearcher] - Unable to parse Satsuma dwarf (Nepovirus). Name of type virus unparsable: Satsuma dwarf (Nepovirus) 2014-06-20 01:51:25,300 WARN : [ALANameSearcher] - Unable to parse Shallot latent carlavirus. Name of type virus unparsable: Shallot latent carlavirus 2014-06-20 01:51:25,300 WARN : [ALANameSearcher] - Unable to parse Shallot mite-borne latent potexvirus. Name of type virus unparsable: Shallot mite-borne latent potexvirus 2014-06-20 01:51:25,301 WARN : [ALANameSearcher] - Unable to parse Shallot yellow stripe potyvirus. Name of type virus unparsable: Shallot yellow stripe potyvirus 2014-06-20 01:51:25,304 WARN : [ALANameSearcher] - Unable to parse Sint-Jan’s onion latent carlavirus. Name of type virus unparsable: Sint-Jan’s onion latent carlavirus 2014-06-20 01:51:25,307 WARN : [ALANameSearcher] - Unable to parse Slow paralysis (Iflavirus). Name of type virus unparsable: Slow paralysis (Iflavirus) 2014-06-20 01:51:25,310 WARN : [ALANameSearcher] - Unable to parse Sobemovirus. Name of type virus unparsable: Sobemovirus 2014-06-20 01:51:25,310 WARN : [ALANameSearcher] - Unable to parse Soil-borne wheat mosaic (Furovirus). Name of type virus unparsable: Soil-borne wheat mosaic (Furovirus) 2014-06-20 01:51:25,322 WARN : [ALANameSearcher] - Unable to parse Sorghum Mosaic Virus (Potyvirus). Name of type virus unparsable: Sorghum Mosaic Virus (Potyvirus) 2014-06-20 01:51:25,322 WARN : [ALANameSearcher] - Unable to parse Sorghum mosaic (Potyvirus). Name of type virus unparsable: Sorghum mosaic (Potyvirus) 2014-06-20 01:51:25,323 WARN : [ALANameSearcher] - Unable to parse Sour cherry green ring mottle (Closterovirus). Name of type virus unparsable: Sour cherry green ring mottle (Closterovirus) 2014-06-20 01:51:25,359 WARN : [ALANameSearcher] - Unable to parse Squash leaf curl (Begomovirus). Name of type virus unparsable: Squash leaf curl (Begomovirus) 2014-06-20 01:51:25,381 WARN : [ALANameSearcher] - Unable to parse Strawberry latent C (Rhabdovirus). Name of type virus unparsable: Strawberry latent C (Rhabdovirus) 2014-06-20 01:51:25,382 WARN : [ALANameSearcher] - Unable to parse Strawberry latent ringspot (Nepovirus). Name of type virus unparsable: Strawberry latent ringspot (Nepovirus) 2014-06-20 01:51:25,419 WARN : [ALANameSearcher] - Unable to parse Sugarcane Mosaic Virus (Potyvirus). Name of type virus unparsable: Sugarcane Mosaic Virus (Potyvirus) 2014-06-20 01:51:25,420 WARN : [ALANameSearcher] - Unable to parse Sugarcane Streak Mosaic Virus (Potyvirus). Name of type virus unparsable: Sugarcane Streak Mosaic Virus (Potyvirus) 2014-06-20 01:51:25,420 WARN : [ALANameSearcher] - Unable to parse Sugarcane Streak Virus (Mastrevirus). Name of type virus unparsable: Sugarcane Streak Virus (Mastrevirus) 2014-06-20 01:51:25,421 WARN : [ALANameSearcher] - Unable to parse Sugarcane streak mosaic (Unassigned). Name of type blacklisted unparsable: Sugarcane streak mosaic (Unassigned) 2014-06-20 01:51:25,423 WARN : [ALANameSearcher] - Unable to parse Sunflower mosaic (Potyvirus). Name of type virus unparsable: Sunflower mosaic (Potyvirus) 2014-06-20 01:51:25,423 WARN : [ALANameSearcher] - Unable to parse Sunflower yellow blotch (Umbravirus). Name of type virus unparsable: Sunflower yellow blotch (Umbravirus) 2014-06-20 01:51:25,434 WARN : [ALANameSearcher] - Unable to parse Sweet potato leaf curl (Begomovirus). Name of type virus unparsable: Sweet potato leaf curl (Begomovirus) 2014-06-20 01:51:25,527 WARN : [ALANameSearcher] - Unable to parse Thomasia purpurea x solanacea. Name of type hybrid unparsable: Thomasia purpurea x solanacea 2014-06-20 01:51:25,574 WARN : [ALANameSearcher] - Unable to parse Tobacco etch (Potyvirus). Name of type virus unparsable: Tobacco etch (Potyvirus) 2014-06-20 01:51:25,575 WARN : [ALANameSearcher] - Unable to parse Tobacco leaf curl (Bigeminivirus). Name of type virus unparsable: Tobacco leaf curl (Bigeminivirus) 2014-06-20 01:51:25,577 WARN : [ALANameSearcher] - Unable to parse Tobacco rattle (Tobravirus) (exotic strains). Name of type virus unparsable: Tobacco rattle (Tobravirus) (exotic strains) 2014-06-20 01:51:25,578 WARN : [ALANameSearcher] - Unable to parse Tobacco ringspot (Nepovirus). Name of type virus unparsable: Tobacco ringspot (Nepovirus) 2014-06-20 01:51:25,580 WARN : [ALANameSearcher] - Unable to parse Tomato black ring nepovirus. Name of type virus unparsable: Tomato black ring nepovirus 2014-06-20 01:51:25,580 WARN : [ALANameSearcher] - Unable to parse Tomato black ring (Nepovirus). Name of type virus unparsable: Tomato black ring (Nepovirus) 2014-06-20 01:51:25,581 WARN : [ALANameSearcher] - Unable to parse Tomato black ring (Nepovirus). Name of type virus unparsable: Tomato black ring (Nepovirus) 2014-06-20 01:51:25,581 WARN : [ALANameSearcher] - Unable to parse Tomato blackring (Nepovirus). Name of type virus unparsable: Tomato blackring (Nepovirus) 2014-06-20 01:51:25,582 WARN : [ALANameSearcher] - Unable to parse Tomato blackring (Nepovirus). Name of type virus unparsable: Tomato blackring (Nepovirus) 2014-06-20 01:51:25,583 WARN : [ALANameSearcher] - Unable to parse Tomato bushy stunt (Tombusvirus). Name of type virus unparsable: Tomato bushy stunt (Tombusvirus) 2014-06-20 01:51:25,583 WARN : [ALANameSearcher] - Unable to parse Tomato ringspot (Nepovirus). Name of type virus unparsable: Tomato ringspot (Nepovirus) 2014-06-20 01:51:25,592 WARN : [ALANameSearcher] - Unable to parse Tomato ringspot (Nepovirus). Name of type virus unparsable: Tomato ringspot (Nepovirus) 2014-06-20 01:51:25,594 WARN : [ALANameSearcher] - Unable to parse Tospovirus. Name of type virus unparsable: Tospovirus 2014-06-20 01:51:25,664 WARN : [ALANameSearcher] - Unable to parse UNKNOWN. Name of type blacklisted unparsable: UNKNOWN 2014-06-20 01:51:25,665 WARN : [ALANameSearcher] - Unable to parse UNKNOWN. Name of type blacklisted unparsable: UNKNOWN 2014-06-20 01:51:25,665 WARN : [ALANameSearcher] - Unable to parse UNKNOWN. Name of type blacklisted unparsable: UNKNOWN 2014-06-20 01:51:25,667 WARN : [ALANameSearcher] - Unable to parse Unassigned family, Potexvirus, Potato Virus X. Name of type blacklisted unparsable: Unassigned family, Potexvirus, Potato Virus X 2014-06-20 01:51:25,668 WARN : [ALANameSearcher] - Unable to parse Unassigned family, Tobravirus, Tobacco Rattle Virus. Syn. Potato stem mottle. Name of type blacklisted unparsable: Unassigned family, Tobravirus, Tobacco Rattle Virus. Syn. Potato stem mottle 2014-06-20 01:51:25,670 WARN : [ALANameSearcher] - Unable to parse Unassigned family,: Pomovirus; Potato mop-top. Name of type blacklisted unparsable: Unassigned family,: Pomovirus; Potato mop-top 2014-06-20 01:51:25,670 WARN : [ALANameSearcher] - Unable to parse Undetermined. Name of type blacklisted unparsable: Undetermined 2014-06-20 01:51:25,671 WARN : [ALANameSearcher] - Unable to parse Unknown. Name of type blacklisted unparsable: Unknown 2014-06-20 01:51:25,671 WARN : [ALANameSearcher] - Unable to parse Unknown. Name of type blacklisted unparsable: Unknown 2014-06-20 01:51:25,672 WARN : [ALANameSearcher] - Unable to parse Unknown. Name of type blacklisted unparsable: Unknown 2014-06-20 01:51:25,672 WARN : [ALANameSearcher] - Unable to parse Unknown etiology. Name of type blacklisted unparsable: Unknown etiology 2014-06-20 01:51:25,719 WARN : [ALANameSearcher] - Unable to parse Virus-like Impietratura (Unknown). Name of type blacklisted unparsable: Virus-like Impietratura (Unknown) 2014-06-20 01:51:25,724 WARN : [ALANameSearcher] - Unable to parse Watermelon silver mottle (Tospovirus), Groundnut bud necrosis (Tospovirus), watermelon bud necrosis (Tospovirus). Name of type virus unparsable: Watermelon silver mottle (Tospovirus), Groundnut bud necrosis (Tospovirus), watermelon bud necrosis (Tospovirus) 2014-06-20 01:51:25,726 WARN : [ALANameSearcher] - Unable to parse Welsh onion yellow stripe potyvirus. Name of type virus unparsable: Welsh onion yellow stripe potyvirus 2014-06-20 01:51:25,727 WARN : [ALANameSearcher] - Unable to parse Western X Virginia grapevine yellows III (NAGYIII). Name of type hybrid unparsable: Western X Virginia grapevine yellows III (NAGYIII) 2014-06-20 01:51:25,730 WARN : [ALANameSearcher] - Unable to parse Wheat dwarf (Mastrevirus). Name of type virus unparsable: Wheat dwarf (Mastrevirus) 2014-06-20 01:51:25,730 WARN : [ALANameSearcher] - Unable to parse Wheat spindle streak mosaic (Bymovirus). Name of type virus unparsable: Wheat spindle streak mosaic (Bymovirus) 2014-06-20 01:51:25,731 WARN : [ALANameSearcher] - Unable to parse Wheat yellow leaf (Closterovirus). Name of type virus unparsable: Wheat yellow leaf (Closterovirus) 2014-06-20 01:51:25,731 WARN : [ALANameSearcher] - Unable to parse Wheat yellow mosaic (Bymovirus). Name of type virus unparsable: Wheat yellow mosaic (Bymovirus) 2014-06-20 01:51:25,737 WARN : [ALANameSearcher] - Unable to parse X-disease phytoplasma. Name of type unkown unparsable: X-disease phytoplasma 2014-06-20 01:51:25,768 WARN : [ALANameSearcher] - Unable to parse Zucchini lethal chlorosis (Tospovirus). Name of type virus unparsable: Zucchini lethal chlorosis (Tospovirus) 2014-06-20 01:51:25,771 WARN : [ALANameSearcher] - Unable to parse e.g, Pseudococcus calceolariae, Planococcus mali. Name of type unkown unparsable: e.g, Pseudococcus calceolariae, Planococcus mali 2014-06-20 01:51:26,016 INFO : [Consumer] - Killing (Actor.act) thread: 0 ---------------------------------------------------------------------------------------------------------------------------------------------------------------- biocache> index dr0 2014-06-20 01:54:06,289 INFO : [IndexRecords] - Starting to index dr0| until dr0|~ 2014-06-20 01:54:06,609 INFO : [TaxonSpeciesListDAO] - Updating the lists 2014-06-20 01:54:07,474 INFO : [TaxonSpeciesListDAO] - The number of distinct species 0 2014-06-20 01:54:07,477 INFO : [TaxonSpeciesListDAO] - Finished creating the map 2014-06-20 01:54:07,505 INFO : [IndexRecords] - Total indexing time 1.214 seconds 2014-06-20 01:54:07,739 INFO : [SolrIndexDAO] - >>>>>>>>>>>>> Document count of index: 1 2014-06-20 01:54:07,741 INFO : [SolrIndexDAO] - Finalise finished.