[Hit] Scripting : hit_scheduler
Julien Husson
biology.info at gmail.com
Wed Nov 20 13:59:45 CET 2013
When i launch the shell script inside /bin called hit_scheduler.
I've got some error :
line 56: failure: command not found
line 59: success: command not found
I'm not an expert on scripting but the script seems incompatible with
system based on Debian like Ubuntu. While CentOS / OSX uses
/etc/init.d/functions as the init function libraries, Ubuntu uses
/lib/lsb/init-functions.
I made some changes on the code
s/success/return $?
s/failure/return $?
*and the hit_scheduler service runs now.*
But i'm not sure about the result 'cause i don't know the implementation of
the success/failure function on the web.
But now i've got an other error when i load jobs on the webapp interface.
ognl.ExpressionSyntaxException: Malformed OGNL expression: datasource.94
[ognl.ParseException: Encountered ".94" at line 1, column 11.
Was expecting one of:
<EOF>
"," ...
"=" ...
"?" ...
"||" ...
"or" ...
"&&" ...
"and" ...
"|" ...
"bor" ...
"^" ...
[.............]
<DYNAMIC_SUBSCRIPT> ...
]
at ognl.Ognl.parseExpression(Ognl.java:116)
at com.opensymphony.xwork2.ognl.OgnlUtil.compile(OgnlUtil.java:207)
at com.opensymphony.xwork2.ognl.OgnlUtil.setValue(OgnlUtil.java:192)
at
com.opensymphony.xwork2.ognl.OgnlValueStack.setValue(OgnlValueStack.java:155)
at
com.opensymphony.xwork2.ognl.OgnlValueStack.setValue(OgnlValueStack.java:143)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.setParameters(ParametersInterceptor.java:273)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:187)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:148)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.CheckboxInterceptor.intercept(CheckboxInterceptor.java:93)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:235)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:89)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ScopedModelDrivenInterceptor.intercept(ScopedModelDrivenInterceptor.java:128)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.ProfilingActivationInterceptor.intercept(ProfilingActivationInterceptor.java:104)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:267)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:138)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:148)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:164)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:128)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:176)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52)
at
org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:468)
at
org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
com.opensymphony.module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119)
at
com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.struts2.dispatcher.ActionContextCleanUp.doFilter(ActionContextCleanUp.java:102)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
at
org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
at
org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:101)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:150)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
at
org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
at
org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1023)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:744)
/-- Encapsulated exception ------------\
ognl.ParseException: Encountered ".94" at line 1, column 11.
Was expecting one of:
<DYNAMIC_SUBSCRIPT> ...
at ognl.OgnlParser.generateParseException(OgnlParser.java:3157)
at ognl.OgnlParser.jj_consume_token(OgnlParser.java:3034)
at ognl.OgnlParser.topLevelExpression(OgnlParser.java:18)
at ognl.Ognl.parseExpression(Ognl.java:113)
at com.opensymphony.xwork2.ognl.OgnlUtil.compile(OgnlUtil.java:207)
at com.opensymphony.xwork2.ognl.OgnlUtil.setValue(OgnlUtil.java:192)
at
com.opensymphony.xwork2.ognl.OgnlValueStack.setValue(OgnlValueStack.java:155)
at
com.opensymphony.xwork2.ognl.OgnlValueStack.setValue(OgnlValueStack.java:143)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.setParameters(ParametersInterceptor.java:273)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:187)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ParametersInterceptor.doIntercept(ParametersInterceptor.java:195)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.StaticParametersInterceptor.intercept(StaticParametersInterceptor.java:148)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.CheckboxInterceptor.intercept(CheckboxInterceptor.java:93)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.FileUploadInterceptor.intercept(FileUploadInterceptor.java:235)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ModelDrivenInterceptor.intercept(ModelDrivenInterceptor.java:89)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ScopedModelDrivenInterceptor.intercept(ScopedModelDrivenInterceptor.java:128)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.ProfilingActivationInterceptor.intercept(ProfilingActivationInterceptor.java:104)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.debugging.DebuggingInterceptor.intercept(DebuggingInterceptor.java:267)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ChainingInterceptor.intercept(ChainingInterceptor.java:126)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.PrepareInterceptor.doIntercept(PrepareInterceptor.java:138)
at
com.opensymphony.xwork2.interceptor.MethodFilterInterceptor.intercept(MethodFilterInterceptor.java:87)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.I18nInterceptor.intercept(I18nInterceptor.java:148)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.interceptor.ServletConfigInterceptor.intercept(ServletConfigInterceptor.java:164)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.AliasInterceptor.intercept(AliasInterceptor.java:128)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
com.opensymphony.xwork2.interceptor.ExceptionMappingInterceptor.intercept(ExceptionMappingInterceptor.java:176)
at
com.opensymphony.xwork2.DefaultActionInvocation.invoke(DefaultActionInvocation.java:236)
at
org.apache.struts2.impl.StrutsActionProxy.execute(StrutsActionProxy.java:52)
at
org.apache.struts2.dispatcher.Dispatcher.serviceAction(Dispatcher.java:468)
at
org.apache.struts2.dispatcher.FilterDispatcher.doFilter(FilterDispatcher.java:395)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
com.opensymphony.module.sitemesh.filter.PageFilter.parsePage(PageFilter.java:119)
at
com.opensymphony.module.sitemesh.filter.PageFilter.doFilter(PageFilter.java:55)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.struts2.dispatcher.ActionContextCleanUp.doFilter(ActionContextCleanUp.java:102)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:311)
at
org.springframework.security.web.access.intercept.FilterSecurityInterceptor.invoke(FilterSecurityInterceptor.java:116)
at
org.springframework.security.web.access.intercept.FilterSecurityInterceptor.doFilter(FilterSecurityInterceptor.java:83)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.access.ExceptionTranslationFilter.doFilter(ExceptionTranslationFilter.java:113)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.session.SessionManagementFilter.doFilter(SessionManagementFilter.java:101)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.AnonymousAuthenticationFilter.doFilter(AnonymousAuthenticationFilter.java:113)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.servletapi.SecurityContextHolderAwareRequestFilter.doFilter(SecurityContextHolderAwareRequestFilter.java:54)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.savedrequest.RequestCacheAwareFilter.doFilter(RequestCacheAwareFilter.java:45)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.www.BasicAuthenticationFilter.doFilter(BasicAuthenticationFilter.java:150)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.AbstractAuthenticationProcessingFilter.doFilter(AbstractAuthenticationProcessingFilter.java:182)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.authentication.logout.LogoutFilter.doFilter(LogoutFilter.java:105)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.context.SecurityContextPersistenceFilter.doFilter(SecurityContextPersistenceFilter.java:87)
at
org.springframework.security.web.FilterChainProxy$VirtualFilterChain.doFilter(FilterChainProxy.java:323)
at
org.springframework.security.web.FilterChainProxy.doFilter(FilterChainProxy.java:173)
at
org.springframework.web.filter.DelegatingFilterProxy.invokeDelegate(DelegatingFilterProxy.java:237)
at
org.springframework.web.filter.DelegatingFilterProxy.doFilter(DelegatingFilterProxy.java:167)
at
org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:243)
at
org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:210)
at
org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:222)
at
org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:123)
at
org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:502)
at
org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:171)
at
org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:99)
at
org.apache.catalina.valves.AccessLogValve.invoke(AccessLogValve.java:953)
at
org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:118)
at
org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:408)
at
org.apache.coyote.http11.AbstractHttp11Processor.process(AbstractHttp11Processor.java:1023)
at
org.apache.coyote.AbstractProtocol$AbstractConnectionHandler.process(AbstractProtocol.java:589)
at
org.apache.tomcat.util.net.JIoEndpoint$SocketProcessor.run(JIoEndpoint.java:312)
at
java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145)
at
java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615)
at java.lang.Thread.run(Thread.java:744)
\--------------------------------------/
expr: datasource.94 val: [Ljava.lang.String;@44f43a43 context:
ognl.OgnlContext at 32d910d1root:[org.gbif.harvest.webapp.action.BioDatasourceAction at 7e1d2812,
com.opensymphony.xwork2.DefaultTextProvider at 2c31f66d] value:
[Ljava.lang.String;@44f43a43
starting operations
I'm wondering If someone can help me.
Julien H.
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