<div dir="ltr"><div class="gmail_default" style="font-size:small">Thanks Mauro.</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">The point is that I want to use the web interface provided by GBIF.</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Best</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">Eduardo</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><font face="verdana, sans-serif"><br></font><font face="verdana, sans-serif"><font size="1">--------------------------------</font></font><div><b><span style="line-height:14.720000267028809px"><font face="verdana, sans-serif" size="1"><a href="http://eduardo.dalc.in" target="_blank">Eduardo Dalcin</a></font></span></b></div><div><font face="verdana, sans-serif" size="1"><b><span style="line-height:11.5px"></span></b><span style="line-height:11px">Instituto de Pesquisas Jardim Botânico do Rio de Janeiro - JBRJ</span></font></div><div><font face="verdana, sans-serif" size="1"><span style="line-height:11px">Diretoria de Pesquisas</span></font></div><div><font size="1">e-mail: <a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a><br></font></div><div><font face="verdana, sans-serif" size="1"><span style="line-height:11px"></span><span style="line-height:11px">Trabalho / Work: +55 21 3204 2116</span></font></div><div><font face="verdana, sans-serif" size="1"><span style="line-height:11px">WhatsApp / Telegram: +55 21 98393 3344</span></font></div><div><font face="verdana, sans-serif" size="1"><span style="line-height:11px"><a href="http://dados.jbrj.gov.br/" target="_blank">Portal de Dados do JBRJ/DIPEQ</a></span></font></div><div><font size="1"><span style="font-family:verdana,sans-serif">--------------------------------</span></font></div><div style="font-family:verdana,sans-serif"></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Sep 1, 2016 at 11:16 AM, Mauro Cavalcanti <span dir="ltr"><<a href="mailto:maurobio@gmail.com" target="_blank">maurobio@gmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div><div>Here is how to achieve this using Python/pygbif (what else? ;-))<br><br>from pprint import pprint<span class=""><br>from pygbif import species, occurrences<br><br></span>taxon_name = "Plantae" # a kingdom level taxon<br>taxon_rank = "kingdom" <br><span class=""><br>key = species.name_backbone(name=<wbr>taxon_name, rank=taxon_rank)["usageKey"]<br>n = occurrences.count(taxonKey=<wbr>key, isGeoreferenced=True)<br></span>print format(n, ','), " record(s) for ", taxon_name<br><br>max = 5 # maximum number of records to retrieve<br>results = occurrences.search(taxonKey=<wbr>key, basisOfRecord="PRESERVED_<wbr>SPECIMEN", hasCoordinate=True, limit=max)<br>for x in results["results"]:<br> print pprint(x) # results are returned in JSON format<br><br></div>Hope it helps.<br><br></div>Salud!<br></div><div class="gmail_extra"><div><div class="h5"><br><div class="gmail_quote">2016-09-01 10:28 GMT-03:00 Eduardo Dalcin <span dir="ltr"><<a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a>></span>:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-size:small">Oops: <a href="http://www.gbif.org/occurrence/search?taxon_key=Plantae&basis_of_record=PRESERVED_SPECIMEN" target="_blank">http://www.gbif.org/occu<wbr>rrence/search?taxon_key=Planta<wbr>e&basis_of_record=PRESERVED_<wbr>SPECIMEN</a></div></div><div class="gmail_extra"><br clear="all"><div><div data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><font face="verdana, sans-serif"><br></font><font face="verdana, sans-serif"><font size="1">------------------------------<wbr>--</font></font><div><b><span style="line-height:14.720000267028809px"><font size="1" face="verdana, sans-serif"><a href="http://eduardo.dalc.in" target="_blank">Eduardo Dalcin</a></font></span></b></div><div><font size="1" face="verdana, sans-serif"><b><span style="line-height:11.5px"></span></b><span style="line-height:11px">Instituto de Pesquisas Jardim Botânico do Rio de Janeiro - JBRJ</span></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px">Diretoria de Pesquisas</span></font></div><div><font size="1">e-mail: <a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a><br></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px"></span><span style="line-height:11px">Trabalho / Work: <a href="tel:%2B55%2021%203204%202116" value="+552132042116" target="_blank">+55 21 3204 2116</a></span></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px">WhatsApp / Telegram: <a href="tel:%2B55%2021%2098393%203344" value="+5521983933344" target="_blank">+55 21 98393 3344</a></span></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px"><a href="http://dados.jbrj.gov.br/" target="_blank">Portal de Dados do JBRJ/DIPEQ</a></span></font></div><div><font size="1"><span style="font-family:verdana,sans-serif">------------------------------<wbr>--</span></font></div><div style="font-family:verdana,sans-serif"></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Thu, Sep 1, 2016 at 10:27 AM, Eduardo Dalcin <span dir="ltr"><<a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div dir="ltr"><div class="gmail_default" style="font-size:small">That's it! Thanks!</div><div class="gmail_default" style="font-size:small"><br></div><div class="gmail_default" style="font-size:small">I don't get this:</div><div class="gmail_default" style="font-size:small"><img src="cid:ii_156e5eeafbd82eb4" alt="Inline image 1" height="135" width="436"><br></div></div><div class="gmail_extra"><span><br clear="all"><div><div data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><div dir="ltr"><font face="verdana, sans-serif"><br></font><font face="verdana, sans-serif"><font size="1">------------------------------<wbr>--</font></font><div><b><span style="line-height:14.720000267028809px"><font size="1" face="verdana, sans-serif"><a href="http://eduardo.dalc.in" target="_blank">Eduardo Dalcin</a></font></span></b></div><div><font size="1" face="verdana, sans-serif"><b><span style="line-height:11.5px"></span></b><span style="line-height:11px">Instituto de Pesquisas Jardim Botânico do Rio de Janeiro - JBRJ</span></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px">Diretoria de Pesquisas</span></font></div><div><font size="1">e-mail: <a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a><br></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px"></span><span style="line-height:11px">Trabalho / Work: <a href="tel:%2B55%2021%203204%202116" value="+552132042116" target="_blank">+55 21 3204 2116</a></span></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px">WhatsApp / Telegram: <a href="tel:%2B55%2021%2098393%203344" value="+5521983933344" target="_blank">+55 21 98393 3344</a></span></font></div><div><font size="1" face="verdana, sans-serif"><span style="line-height:11px"><a href="http://dados.jbrj.gov.br/" target="_blank">Portal de Dados do JBRJ/DIPEQ</a></span></font></div><div><font size="1"><span style="font-family:verdana,sans-serif">------------------------------<wbr>--</span></font></div><div style="font-family:verdana,sans-serif"></div></div></div></div></div></div></div></div></div></div></div></div>
<br></span><div><div><div class="gmail_quote">On Thu, Sep 1, 2016 at 10:23 AM, Tim Robertson <span dir="ltr"><<a href="mailto:trobertson@gbif.org" target="_blank">trobertson@gbif.org</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word;color:rgb(0,0,0);font-size:14px;font-family:Calibri,sans-serif">
<div>Thanks Eduardo.</div>
<div><br>
</div>
<div>No, you can type “Plantae” or any higher taxa in the scientific name filter and it will assist with autocompletion.</div>
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<div>I hope this helps,</div>
<div>Tim</div>
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<span style="font-weight:bold">From: </span>Eduardo Dalcin <<a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a>><br>
<span style="font-weight:bold">Date: </span>Thursday 1 September 2016 at 15:19<div><div><br>
<span style="font-weight:bold">To: </span>Tim Robertson <<a href="mailto:trobertson@gbif.org" target="_blank">trobertson@gbif.org</a>><br>
<span style="font-weight:bold">Cc: </span>"<a href="mailto:api-users@lists.gbif.org" target="_blank">api-users@lists.gbif.org</a>" <<a href="mailto:api-users@lists.gbif.org" target="_blank">api-users@lists.gbif.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [API-users] Changes in GBIF.org and API<br>
</div></div></div><div><div>
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<div class="gmail_default" style="font-size:small">Hi Tim, Thanks for the prompt reply. Yes, I'm aware of the KEY parameter. My comment is that at the filter, for humans that are not aware of those "obscure codes", still no way to select upper taxonomic ranks
but species, through scientific name. Am I right?</div>
<div class="gmail_default" style="font-size:small"><br>
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<div class="gmail_default" style="font-size:small">Eduardo</div>
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<div><b><span style="line-height:14.720000267028809px"><font size="1" face="verdana,sans-serif"><a href="http://eduardo.dalc.in" target="_blank">Eduardo Dalcin</a></font></span></b></div>
<div><font size="1" face="verdana,sans-serif"><b><span style="line-height:11.5px"></span></b><span style="line-height:11px">Instituto de Pesquisas Jardim Botânico do Rio de Janeiro - JBRJ</span></font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px">Diretoria de Pesquisas</span></font></div>
<div><font size="1">e-mail: <a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a><br>
</font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px"></span><span style="line-height:11px">Trabalho / Work: <a href="tel:%2B55%2021%203204%202116" value="+552132042116" target="_blank">+55 21 3204 2116</a></span></font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px">WhatsApp / Telegram: <a href="tel:%2B55%2021%2098393%203344" value="+5521983933344" target="_blank">+55 21 98393 3344</a></span></font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px"><a href="http://dados.jbrj.gov.br/" target="_blank">Portal de Dados do JBRJ/DIPEQ</a></span></font></div>
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<div class="gmail_quote">On Thu, Sep 1, 2016 at 10:12 AM, Tim Robertson <span dir="ltr">
<<a href="mailto:trobertson@gbif.org" target="_blank">trobertson@gbif.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word;color:rgb(0,0,0);font-size:14px;font-family:Calibri,sans-serif">
<div>Hi Eduardo,</div>
<div><br>
</div>
<div>I hope you are well. I’m not sure I understand your comment I’m afraid. </div>
<div>Taxonomic filters have been working in GBIF since 2007 and they can be combined with any other filters. They are the most used search filters, which all species pages link to.</div>
<div><br>
</div>
<div>Plants: <a href="http://www.gbif.org/occurrence/search?TAXON_KEY=6" target="_blank">http://www.gbif.org/occurrenc<wbr>e/search?TAXON_KEY=6</a> or <a href="http://api.gbif.org/v1/occurrence/search?TAXON_KEY=6" target="_blank">http://api.gbif.org/v1/occu<wbr>rrence/search?TAXON_KEY=6</a></div>
<div>Animals: <a href="http://www.gbif.org/occurrence/search?TAXON_KEY=1" target="_blank">http://www.gbif.org/o<wbr>ccurrence/search?TAXON_KEY=1</a> or <a href="http://api.gbif.org/v1/occurrence/search?TAXON_KEY=1" target="_blank">http://api.gbif.org/v1/occu<wbr>rrence/search?TAXON_KEY=1</a></div>
<div><br>
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<div>I presume you mean something else though - can you please explain and I’ll try and help?</div>
<div><br>
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<div>Thanks,</div>
<div>Tim</div>
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<span style="font-weight:bold">From: </span>Eduardo Dalcin <<a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a>><br>
<span style="font-weight:bold">Date: </span>Thursday 1 September 2016 at 14:55<br>
<span style="font-weight:bold">To: </span>Tim Robertson <<a href="mailto:trobertson@gbif.org" target="_blank">trobertson@gbif.org</a>><br>
<span style="font-weight:bold">Cc: </span>"<a href="mailto:api-users@lists.gbif.org" target="_blank">api-users@lists.gbif.org</a>" <<a href="mailto:api-users@lists.gbif.org" target="_blank">api-users@lists.gbif.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [API-users] Changes in GBIF.org and API<br>
</div>
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<div class="gmail_default" style="font-size:small">Congrats folks! Great job!</div>
<div class="gmail_default" style="font-size:small"><br>
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<div class="gmail_default">Still no way to separate plants of animals, or I missing something?<br>
</div>
<div class="gmail_default"><br>
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<div class="gmail_default">Cheers</div>
<div class="gmail_default"><br>
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<div class="gmail_default">Eduardo</div>
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<div><b><span style="line-height:14.720000267028809px"><font size="1" face="verdana,sans-serif"><a href="http://eduardo.dalc.in" target="_blank">Eduardo Dalcin</a></font></span></b></div>
<div><font size="1" face="verdana,sans-serif"><b><span style="line-height:11.5px"></span></b><span style="line-height:11px">Instituto de Pesquisas Jardim Botânico do Rio de Janeiro - JBRJ</span></font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px">Diretoria de Pesquisas</span></font></div>
<div><font size="1">e-mail: <a href="mailto:edalcin@jbrj.org" target="_blank">edalcin@jbrj.org</a><br>
</font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px"></span><span style="line-height:11px">Trabalho / Work:
<a href="tel:%2B55%2021%203204%202116" value="+552132042116" target="_blank">+55 21 3204 2116</a></span></font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px">WhatsApp / Telegram:
<a href="tel:%2B55%2021%2098393%203344" value="+5521983933344" target="_blank">+55 21 98393 3344</a></span></font></div>
<div><font size="1" face="verdana,sans-serif"><span style="line-height:11px"><a href="http://dados.jbrj.gov.br/" target="_blank">Portal de Dados do JBRJ/DIPEQ</a></span></font></div>
<div><font size="1"><span style="font-family:verdana,sans-serif">------------------------------<wbr>--</span></font></div>
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<div class="gmail_quote">On Thu, Sep 1, 2016 at 8:55 AM, Tim Robertson <span dir="ltr">
<<a href="mailto:trobertson@gbif.org" target="_blank">trobertson@gbif.org</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
<div style="word-wrap:break-word;color:rgb(0,0,0);font-size:14px;font-family:Calibri,sans-serif">
<div>Hi folks,</div>
<div><br>
</div>
<div>I am very happy to let you know that a new release of GBIF.org went online at lunchtime today with the following enhancements:</div>
<div><br>
</div>
<div>
<div><b>Occurrence search (<a href="http://www.gbif.org/occurrence/search" target="_blank">http://www.gbif.org/occurrenc<wbr>e/search</a>):</b></div>
<ul>
<li>New locality based filters:
<ul>
<li>locality, province/state and water body</li><li>These are not interpreted terms, but allow search based on what publishers state</li><li><a href="http://www.gbif.org/occurrence/search?STATE_PROVINCE=California" target="_blank">http://www.gbif.org/occurrence<wbr>/search?STATE_PROVINCE=Califor<wbr>nia</a> </li><li><a href="http://www.gbif.org/occurrence/search?WATER_BODY=AMAZONAS+BASIN%2C+RIO+JURUA" target="_blank">http://www.gbif.org/occurrence<wbr>/search?WATER_BODY=AMAZONAS+BA<wbr>SIN%2C+RIO+JURUA</a></li></ul>
</li><li>A new organismID filter
<ul>
<li><a href="http://www.gbif.org/occurrence/search?ORGANISM_ID=100" target="_blank">http://www.gbif.org/occurrence<wbr>/search?ORGANISM_ID=100</a> </li></ul>
</li><li>Publishing protocol filter
<ul>
<li><a href="http://www.gbif.org/occurrence/search?PROTOCOL=TAPIR" target="_blank">http://www.gbif.org/occurrence<wbr>/search?PROTOCOL=TAPIR</a> </li></ul>
</li><li>License filter and facet:
<ul>
<li><a href="http://www.gbif.org/occurrence/search?license=CC_BY_4_0" target="_blank">http://www.gbif.org/occurrence<wbr>/search?license=CC_BY_4_0</a></li></ul>
</li><li>The occurrence API supports all the filters mentioned above with the addition of also allowing search by publishing organisation</li></ul>
<div><b>Occurrence downloads</b>: </div>
<ul>
<li>The rights.txt file: has been changed to list all the licenses of datasets included in that download.</li><li>DwC-A based downloads and the Datacite metada (DOIs) use the most restrictive license of the datasets included in the download defaulting to CC-BY.</li><li>The CSV downloads contain a new column ‘<i>License</i>’.</li></ul>
<div>The <b>Dataset search page</b> now supports faceted navigation by license: <a href="http://www.gbif.org/dataset/search?license=CC_BY_4_0" target="_blank">
http://www.gbif.org/dataset/se<wbr>arch?license=CC_BY_4_0</a> </div>
<div><br>
</div>
<div>In the release, we have temporarily broken the “<i>repatriation</i>” filter which is being re-enabled now, and will be online again tomorrow. Sorry about this partial outage of that search term.</div>
</div>
<div><br>
</div>
<div>Many thanks,</div>
<div>Tim</div>
<div><br>
</div>
<div><br>
</div>
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<br>
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<br></blockquote></div><br><br clear="all"><br></div></div><span class="">-- <br><div data-smartmail="gmail_signature">Dr. Mauro J. Cavalcanti<br>E-mail: <a href="mailto:maurobio@gmail.com" target="_blank">maurobio@gmail.com</a><br>Web: <a href="http://sites.google.com/site/maurobio" target="_blank">http://sites.google.com/site/<wbr>maurobio</a></div>
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