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Hi Bart,
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<div class="">I guess I’d regard Fauna Europaea, WoRMS, etc. as already too many identifiers, but I digress ;)</div>
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<div class="">The URL you create is nice, but it is for a web page, and furthermore it is for the old GBIF portal. I think the original goal was to programmatically get the GBIF id in order to access GBIF data, via the GBIF API, using a EU-BON-derived identifier.</div>
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<div class="">Regards</div>
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<div class="">Rod</div>
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---------------------------------------------------------<br class="">
Roderic Page<br class="">
Professor of Taxonomy<br class="">
Institute of Biodiversity, Animal Health and Comparative Medicine<br class="">
College of Medical, Veterinary and Life Sciences<br class="">
Graham Kerr Building<br class="">
University of Glasgow<br class="">
Glasgow G12 8QQ, UK<br class="">
<br class="">
Email: <span class="Apple-tab-span" style="white-space: pre;"> </span><a href="mailto:Roderic.Page@glasgow.ac.uk" class="">Roderic.Page@glasgow.ac.uk</a><br class="">
Tel: <span class="Apple-tab-span" style="white-space: pre;"> </span>+44 141 330 4778<br class="">
Skype: <span class="Apple-tab-span" style="white-space: pre;"> </span>rdmpage<br class="">
Facebook: <span class="Apple-tab-span" style="white-space: pre;"> </span>http://www.facebook.com/rdmpage<br class="">
LinkedIn: <span class="Apple-tab-span" style="white-space: pre;"> </span>http://uk.linkedin.com/in/rdmpage<br class="">
Twitter: <span class="Apple-tab-span" style="white-space: pre;"> </span>http://twitter.com/rdmpage<br class="">
Blog: <span class="Apple-tab-span" style="white-space: pre;"> </span>http://iphylo.blogspot.com<br class="">
ORCID: <span class="Apple-tab-span" style="white-space: pre;"> </span>http://orcid.org/0000-0002-7101-9767</div>
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Citations: <span class="Apple-tab-span" style="white-space: pre;"> </span><a href="http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ" class="">http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ</a></div>
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ResearchGate<span class="Apple-tab-span" style="white-space: pre;"> </span><a href="https://www.researchgate.net/profile/Roderic_Page" class="">https://www.researchgate.net/profile/Roderic_Page</a><br class="">
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<div class="">On 26 Jan 2015, at 11:49, Bart Vanhoorne <<a href="mailto:bart.vanhoorne@vliz.be" class="">bart.vanhoorne@vliz.be</a>> wrote:</div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Rod,<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Creating new identifiers is exactly what PESI has<b class=""><span class="Apple-converted-space"> </span>NOT</b><span class="Apple-converted-space"> </span>done!<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">It has re-used the identifiers from it’s source databases: Fauna Europaea, ERMS/WoRMS & Index Fungorum.<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">I think the same is true for EU-BON’s taxonomic backbone as they uses PESI.<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">So maybe we should reformulate the question and ask why GBIF is adding to the identifier soup… :)<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Anyway, about the initial question: PESI vs GBIF identifiers.<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">We have used the short version what you describe: we don’t even need to call the GBIF API to generate the links:<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Same example for<span class="Apple-converted-space"> </span></span><span style="font-size: 9pt; font-family: 'Segoe UI', sans-serif;" class="">Prionus Geoffroy,
1762</span><span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">:<span class="Apple-converted-space"> </span><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""><a href="http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:faunaeur.org:taxname:115091" style="color: purple; text-decoration: underline;" class="">http://www.eu-nomen.eu/portal/taxon.php?GUID=urn:lsid:faunaeur.org:taxname:115091</a><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""><a href="http://data.gbif.org/species/" style="color: purple; text-decoration: underline;" class="">http://data.gbif.org/species/</a><span class="Apple-converted-space"> </span>+
[Fauna Europaea species identifier=115091] + /resource/ [GBIF dataset id for FE=13560]<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">=><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""><a href="http://data.gbif.org/species/115091/resource/13560" style="color: purple; text-decoration: underline;" class="">http://data.gbif.org/species/115091/resource/13560</a><o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">And there is the GBIF link, without calling any API.<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Regards,<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Bart Vanhoorne<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">WoRMS Data Management Team<o:p class=""></o:p></span></div>
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<span style="font-size: 10pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">PESI DMT Team<o:p class=""></o:p></span></div>
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<b class=""><span style="font-size: 10pt; font-family: Tahoma, sans-serif;" class="">From:</span></b><span style="font-size: 10pt; font-family: Tahoma, sans-serif;" class=""><span class="Apple-converted-space"> </span>Roderic Page [<a href="mailto:Roderic.Page@glasgow.ac.uk" class="">mailto:Roderic.Page@glasgow.ac.uk</a>]<span class="Apple-converted-space"> </span><br class="">
<b class="">Sent:</b><span class="Apple-converted-space"> </span>Monday, January 26, 2015 12:05<br class="">
<b class="">To:</b><span class="Apple-converted-space"> </span>Donat Agosti<br class="">
<b class="">Cc:</b><span class="Apple-converted-space"> </span><a href="mailto:wp1@eubon.eu" class="">wp1@eubon.eu</a>;
<a href="mailto:wp2@eubon.eu" class="">wp2@eubon.eu</a>; <a href="mailto:api-users@lists.gbif.org" class="">
api-users@lists.gbif.org</a>; Tim Robertson; Antonio García Camacho; <a href="mailto:info@eu-nomen.eu" class="">
info@eu-nomen.eu</a><br class="">
<b class="">Subject:</b><span class="Apple-converted-space"> </span>Re: [API-users] API GBIF: search species using GUID (LSID)<o:p class=""></o:p></span></div>
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<o:p class=""> </o:p></div>
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And while we’re at it, will someone please explain why every biodiversity informatics project seems to feel that it is essential that it produces its own identifiers, independently of whatever has gone before. Simply contributing to the identifier soup is not
helpful.<span class="Apple-converted-space"> </span><o:p class=""></o:p></div>
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Regards<o:p class=""></o:p></div>
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Rod<o:p class=""></o:p></div>
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<o:p class=""> </o:p></div>
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<span style="" class="">---------------------------------------------------------<br class="">
Roderic Page<br class="">
Professor of Taxonomy<br class="">
Institute of Biodiversity, Animal Health and Comparative Medicine<br class="">
College of Medical, Veterinary and Life Sciences<br class="">
Graham Kerr Building<br class="">
University of Glasgow<br class="">
Glasgow G12 8QQ, UK<br class="">
<br class="">
Email: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span><a href="mailto:Roderic.Page@glasgow.ac.uk" style="color: purple; text-decoration: underline;" class="">Roderic.Page@glasgow.ac.uk</a><br class="">
Tel: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span>+44 141 330 4778<br class="">
Skype: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span>rdmpage<br class="">
Facebook: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span><a href="http://www.facebook.com/rdmpage" class="">http://www.facebook.com/rdmpage</a><br class="">
LinkedIn: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span>http://uk.linkedin.com/in/rdmpage<br class="">
Twitter: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span>http://twitter.com/rdmpage<br class="">
Blog: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span>http://iphylo.blogspot.com<br class="">
ORCID: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span>http://orcid.org/0000-0002-7101-9767<o:p class=""></o:p></span></div>
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<span style="" class="">Citations: <span class="apple-tab-span"><span class="Apple-converted-space"> </span></span><a href="http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ" style="color: purple; text-decoration: underline;" class="">http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ</a><o:p class=""></o:p></span></div>
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<span style="" class="">ResearchGate<span class="apple-tab-span"><span class="Apple-converted-space"> </span></span><a href="https://www.researchgate.net/profile/Roderic_Page" style="color: purple; text-decoration: underline;" class="">https://www.researchgate.net/profile/Roderic_Page</a><o:p class=""></o:p></span></p>
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<o:p class=""> </o:p></div>
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On 26 Jan 2015, at 10:36, Donat Agosti <<a href="mailto:agosti@amnh.org" style="color: purple; text-decoration: underline;" class="">agosti@amnh.org</a>> wrote:<o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Dear Anton and colleagues</span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Might it be possible to pick this issue regarding the taxonomic backbone up, since this concerns EU-BON? I think this is an important issue to assure that GBIF/EU-BON’s
names are mapped.</span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Cheers</span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Donat</span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div>
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<span style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class=""> </span><o:p class=""></o:p></div>
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<b class=""><span style="font-size: 11pt; font-family: Calibri, sans-serif;" class="">From:</span></b><span class="apple-converted-space"><span style="font-size: 11pt; font-family: Calibri, sans-serif;" class=""> </span></span><span style="font-size: 11pt; font-family: Calibri, sans-serif;" class="">API-users
[<a href="mailto:api-users-bounces@lists.gbif.org" style="color: purple; text-decoration: underline;" class="">mailto:api-users-bounces@lists.gbif.org</a>]<span class="apple-converted-space"> </span><b class="">On Behalf Of<span class="apple-converted-space"> </span></b>Roderic
Page<br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>Monday, January 26, 2015 11:13 AM<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>Tim Robertson; Antonio García Camacho;<span class="Apple-converted-space"> </span><a href="mailto:info@eu-nomen.eu" style="color: purple; text-decoration: underline;" class="">info@eu-nomen.eu</a><br class="">
<b class="">Cc:</b><span class="apple-converted-space"> </span><a href="mailto:api-users@lists.gbif.org" style="color: purple; text-decoration: underline;" class="">api-users@lists.gbif.org</a><br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>Re: [API-users] API GBIF: search species using GUID (LSID)</span><o:p class=""></o:p></div>
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Just to follow up on Tim’s response, as far as I can tell from the EU BON taxonomic backbone, the LSID referred to is provided by PESI (e.g., urn:lsid:faunaeur.org:taxname:115091) and - like many LSIDs - sadly doesn’t actually work (in the sense that it can’t
be resolved), see e.g. <a href="http://darwin.zoology.gla.ac.uk/~rpage/lsid/tester/?q=urn%3Alsid%3Afaunaeur.org%3Ataxname%3A115091" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://darwin.zoology.gla.ac.uk/~rpage/lsid/tester/?q=urn%3Alsid%3Afaunaeur.org%3Ataxname%3A115091</span></a><o:p class=""></o:p></div>
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The PESI web site links names to GBIF, so PESI has a mapping between their LSIDs and GBIF. One way to go from a PESI LSID to GBIF would be if PESI provided that mapping in their web services <a href="http://www.eu-nomen.eu/portal/webservices.php" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://www.eu-nomen.eu/portal/webservices.php</span></a> It’s
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Alternatively, Fauna Europaea has been indexed by GBIF (more than once!), so you could use the GBIF API like this:<o:p class=""></o:p></div>
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1. Given a LSID like urn:lsid:faunaeur.org:taxname:115091, trim off the “urn:lsid:faunaeur.org:taxname:” to leave “115091”<o:p class=""></o:p></div>
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2. Call the GBIF API with 115091 as the sourceId key, and datasetKey as 90d9e8a6-0ce1-472d-b682-3451095dbc5a (this is the Fauna Europaea dataset that seems to match the PESI ids <a href="http://www.gbif.org/dataset/90d9e8a6-0ce1-472d-b682-3451095dbc5a" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://www.gbif.org/dataset/90d9e8a6-0ce1-472d-b682-3451095dbc5a</span></a> ).<o:p class=""></o:p></div>
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The URL is:<o:p class=""></o:p></div>
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<a href="http://api.gbif.org/v1/species?sourceId=115091&datasetKey=90d9e8a6-0ce1-472d-b682-3451095dbc5a" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://api.gbif.org/v1/species?sourceId=115091&datasetKey=90d9e8a6-0ce1-472d-b682-3451095dbc5a</span></a><o:p class=""></o:p></div>
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This will give you<o:p class=""></o:p></div>
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{"offset":0,"limit":20,"endOfRecords":true,"results":[{"key":103283278,"nubKey":1097026,"taxonID":"115091","genus":"Prionus","genusKey":103283278,"datasetKey":"90d9e8a6-0ce1-472d-b682-3451095dbc5a","parentKey":103294043,"parent":"Prioninae","scientificName":"Prionus
Geoffroy, 1762","canonicalName":"Prionus","authorship":"Geoffroy, 1762","nameType":"WELLFORMED","rank":"GENUS","origin":"SOURCE","taxonomicStatus":"ACCEPTED","nomenclaturalStatus":[],"numDescendants":6,"references":"<a href="http://www.faunaeur.org/full_results.php?id=115091" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://www.faunaeur.org/full_results.php?id=115091</span></a>","modified":"2014-06-14T21:04:19.241+0000","lastInterpreted":"2014-11-03T15:22:26.302+0000","issues":[],"synonym":false}]}<o:p class=""></o:p></div>
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The “nubKey” field has the value 1097026, which is the identifier for GBIF’s classification <a href="http://www.gbif.org/species/1097026" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://www.gbif.org/species/1097026</span></a>
You can use 1097026 as the key in a query to get the distribution using the GBIF API.<o:p class=""></o:p></div>
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Regards<o:p class=""></o:p></div>
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Rod<o:p class=""></o:p></div>
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---------------------------------------------------------<br class="">
Roderic Page<br class="">
Professor of Taxonomy<br class="">
Institute of Biodiversity, Animal Health and Comparative Medicine<br class="">
College of Medical, Veterinary and Life Sciences<br class="">
Graham Kerr Building<br class="">
University of Glasgow<br class="">
Glasgow G12 8QQ, UK<br class="">
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Email: <span class="apple-converted-space"> </span><a href="mailto:Roderic.Page@glasgow.ac.uk" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">Roderic.Page@glasgow.ac.uk</span></a><br class="">
Tel: <span class="apple-converted-space"> </span>+44 141 330 4778<br class="">
Skype: <span class="apple-converted-space"> </span>rdmpage<br class="">
Facebook: <span class="apple-converted-space"> </span><a href="http://www.facebook.com/rdmpage" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://www.facebook.com/rdmpage</span></a><br class="">
LinkedIn: <span class="apple-converted-space"> </span><a href="http://uk.linkedin.com/in/rdmpage" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://uk.linkedin.com/in/rdmpage</span></a><br class="">
Twitter: <span class="apple-converted-space"> </span><a href="http://twitter.com/rdmpage" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://twitter.com/rdmpage</span></a><br class="">
Blog: <span class="apple-converted-space"> </span><a href="http://iphylo.blogspot.com/" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://iphylo.blogspot.com</span></a><br class="">
ORCID: <span class="apple-converted-space"> </span><a href="http://orcid.org/0000-0002-7101-9767" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://orcid.org/0000-0002-7101-9767</span></a><o:p class=""></o:p></div>
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Citations: <span class="apple-converted-space"> </span><a href="http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://scholar.google.co.uk/citations?hl=en&user=4Z5WABAAAAAJ</span></a><o:p class=""></o:p></div>
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ResearchGate<span class="apple-converted-space"> </span><a href="https://www.researchgate.net/profile/Roderic_Page" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">https://www.researchgate.net/profile/Roderic_Page</span></a><o:p class=""></o:p></p>
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On 26 Jan 2015, at 08:48, Tim Robertson <<a href="mailto:trobertson@gbif.org" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">trobertson@gbif.org</span></a>> wrote:<o:p class=""></o:p></div>
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Hola Antonio<o:p class=""></o:p></div>
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Can you please join and use the GBIF API mailing list for questions relating to the API?<o:p class=""></o:p></div>
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<a href="http://lists.gbif.org/mailman/listinfo/api-users" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://lists.gbif.org/mailman/listinfo/api-users</span></a><o:p class=""></o:p></div>
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We don’t make explicit use of LSIDs on<span class="apple-converted-space"> </span><a href="http://gbif.org/" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">GBIF.org</span></a>. I expect what you want to do
is lookup the GBIF species key using the species API, and then use that on the occurrence API to get occurrences.<o:p class=""></o:p></div>
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E.g. Given the plant genus<span class="apple-converted-space"> </span><i class="">Oenanthe </i> you can look up the taxon (name usage) information using:<o:p class=""></o:p></div>
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<a href="http://api.gbif.org/v1/species/match?verbose=false&kingdom=Plantae&name=Oenante" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://api.gbif.org/v1/species/match?verbose=false&kingdom=Plantae&name=Oenante</span></a><o:p class=""></o:p></div>
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noting the usageID is 3034893 in the response. You’d presumably either do this on demand or map this to your own backbone periodically. This can then be used to search for occurrences:<o:p class=""></o:p></div>
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<a href="http://api.gbif.org/v1/occurrence/search?taxonKey=3034893" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://api.gbif.org/v1/occurrence/search?taxonKey=3034893</span></a><o:p class=""></o:p></div>
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Alternatively, if you were to publish your own checklist and have GBIF index it, the taxa would be searchable using your own sourceId:<o:p class=""></o:p></div>
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<a href="http://api.gbif.org/v1/species?sourceId=%3Cyour%20id%20here%3E" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">http://api.gbif.org/v1/species?sourceId=<your id here></span></a> <o:p class=""></o:p></div>
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I hope this helps,<o:p class=""></o:p></div>
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Tim<o:p class=""></o:p></div>
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On 26 Jan 2015, at 09:35, Éamonn Ó Tuama [GBIF] <<a href="mailto:eotuama@gbif.org" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">eotuama@gbif.org</span></a>> wrote:<o:p class=""></o:p></div>
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<span lang="EN-GB" style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Tim,</span><o:p class=""></o:p></div>
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<span lang="EN-GB" style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Best for you to answer Antonio.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" style="font-size: 11pt; font-family: Calibri, sans-serif; color: rgb(31, 73, 125);" class="">Éamonn</span><o:p class=""></o:p></div>
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<b class=""><span style="font-size: 10pt; font-family: Tahoma, sans-serif;" class="">From:</span></b><span class="apple-converted-space"><span style="font-size: 10pt; font-family: Tahoma, sans-serif;" class=""> </span></span><span style="font-size: 10pt; font-family: Tahoma, sans-serif;" class="">Antonio
García Camacho [<a href="mailto:antonio.garcia.camacho@csic.es" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">mailto:antonio.garcia.camacho@csic.es</span></a>]<span class="apple-converted-space"> </span><br class="">
<b class="">Sent:</b><span class="apple-converted-space"> </span>26 January 2015 01:42<br class="">
<b class="">To:</b><span class="apple-converted-space"> </span>Éamonn Ó Tuama<br class="">
<b class="">Subject:</b><span class="apple-converted-space"> </span>API GBIF: search species using GUID (LSID)</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Dear Éamonn,</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">We found some problems using the GBIF API to search for occurrences and datasets. I will explain the use scenario:</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Using the EU BON taxonomic backbone we will find out the LSID of a given species. Therefore, we want to use this LSID, a universal identifier actually, to ask for datasets and occurrences to each data provider. Using GBIF occurrence
API we can search filtering by scientific name or even by taxonKey, but it seems that we can not filter using the LSID.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Is there a way to filter using species LSIDs or even translating these LSIDs to taxonKeys?</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Thanks,</span><o:p class=""></o:p></div>
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<span lang="EN-GB" class="">Antonio.</span><o:p class=""></o:p></div>
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<span lang="EN-GB" style="background-color: white; background-position: initial initial; background-repeat: initial initial;" class="">-- </span><o:p class=""></o:p></div>
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<strong class=""><span lang="EN-GB" class="">Antonio García Camacho</span></strong><span lang="EN-GB" class=""><br class="">
Estacion Biologica de Doñana (CSIC)<br class="">
Americo Vespucio s/n Isla de la Cartuja<br class="">
41092 Sevilla, España<br class="">
Tel. +34 954232340 / Fax. +34 954621125<br class="">
<a href="mailto:antonio.garcia.camacho@csic.es" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">antonio.garcia.camacho@csic.es</span></a><br class="">
<a href="http://www.ebd.csic.es/" style="color: purple; text-decoration: underline;" class=""><span style="color: purple;" class="">www.ebd.csic.es</span></a></span><o:p class=""></o:p></div>
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_______________________________________________<br class="">
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