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</o:shapelayout></xml><![endif]--></head><body lang=ES link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Dear David,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Thanks so much for the info. I´ll check it on my VM.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Kind regards.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>SaMa.<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>De:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> David.Martin@csiro.au [mailto:David.Martin@csiro.au] <br><b>Enviado el:</b> jueves, 29 de mayo de 2014 11:43<br><b>Para:</b> Santiago Martinez de la Riva; bko@gbif.org<br><b>CC:</b> Ala-portal@lists.gbif.org<br><b>Asunto:</b> RE: [Ala-portal] Installation page updated<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>Thanks Santiago, Burke. <o:p></o:p></span></p><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>The recommended approach for all projects is to load data following the instructions that Burke included in his last email [1].<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>One of the requirements for this to work is that an instance of the collectory is installed.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>What Natasha described (and which is now out of date) is a mechanism for loading data without a collectory instance. This is useful for local development purposes only.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>This can be done on the command line with version 1.1 with the command:<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>biocache>> load-local-csv dr0 /tmp/my-csv.txt<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>The way we load data in our production environment is as follows:<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>1) Create a data resource in the collectory<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>2) Upload a CSV or DwC-A zip file into the collectory using the "Upload file" option<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>3) Use the command line tool describe in [1] to load, sample (optional), process and index the data<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>Hope this helps.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>Dave Martin<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>ALA<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>[1] <a href="https://code.google.com/p/ala-portal/wiki/LoadBiocacheData" target="_blank"><span style='font-size:12.0pt;font-family:"Times New Roman","serif"'>https://code.google.com/p/ala-portal/wiki/LoadBiocacheData</span></a><o:p></o:p></span></p></div><div><p class=MsoNormal><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'><o:p> </o:p></span></p><div><div class=MsoNormal align=center style='text-align:center'><span style='color:black'><hr size=2 width="100%" align=center></span></div><div id=divRpF744838><p class=MsoNormal style='margin-bottom:12.0pt'><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'> ala-portal-bounces@lists.gbif.org [ala-portal-bounces@lists.gbif.org] on behalf of Santiago [sama@gbif.es]<br><b>Sent:</b> 29 May 2014 19:08<br><b>To:</b> 'Burke Chih-Jen Ko [GBIF]'<br><b>Cc:</b> Ala-portal@lists.gbif.org<br><b>Subject:</b> Re: [Ala-portal] Installation page updated</span><span style='color:black'><o:p></o:p></span></p></div><div><div><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Hi Burke,</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I think that you can use the instructions that you refer in your mail when you are running from inside CSIRO/ALA, please someone correct me if I’m wrong.</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>I´m going to tell you my experience:</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>When I want to index a resource I use biocache.jar. I use two options: Load a resource via CSV or via Dwc-A. I attach a mail in which Natasha explains how we can load a resource via Dwc-A.</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>If I want to load a resource through CSV, I execute the next command:</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:10.0pt;font-family:"Courier New";color:black'>java -cp .:biocache.jar au.org.ala.util.DwcCSVLoader drtest -l path-to-file.csv -b true</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>When you have loaded the resource you have to enter in the biocache command line, then you must execute “ >biocache” and then you can process and index the loaded resource. “> process drtest” and “>index drtest”.</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>My problem is that when I want to load a resource via Dwc-A and I execute: </span><span lang=EN-US style='font-size:10.0pt;font-family:"Courier New";color:black'>java -cp .:biocache.jar au.org.ala.util.DwCALoader drtest</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>The system doesn’t find the class: </span><span lang=EN-US style='font-size:10.0pt;font-family:"Courier New";color:black'>au.org.ala.util.DwCALoader</span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>. It´s very weird.</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Could you check if you can do this? I mean, could you check if you can load a resource in the way Natasha explained in her mail?</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>The mappings. I don’t understand one thing. How is it possible that in the demo-portal </span><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'><a href="http://ala-ono.it.csiro.au/generic-hub/occurrences/de34b076-e436-4314-a769-969f8ef36273" target="_blank"><span lang=EN-US>http://ala-ono.it.csiro.au/generic-hub/occurrences/de34b076-e436-4314-a769-969f8ef36273</span></a></span><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>, I can see the information in the right way? This is an example of a Spanish resource from GBIF.org. The occurrences are been loaded, processed and indexed. How is that in our installation we must to do something else if in that installation we can see the indexed occurrences correctly, It is the same installation, right??</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>Kind regards.</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'>SaMa</span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><p class=MsoNormal><span lang=EN-US style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D'> </span><span style='color:black'><o:p></o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0cm 0cm 0cm'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'>De:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'> Burke Chih-Jen Ko [GBIF] [mailto:bko@gbif.org] <br><b>Enviado el:</b> jueves, 29 de mayo de 2014 9:48<br><b>Para:</b> Santiago Martinez de la Riva<br><b>CC:</b> Ala-portal@lists.gbif.org<br><b>Asunto:</b> Re: [Ala-portal] Installation page updated</span><span style='color:black'><o:p></o:p></span></p></div></div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p><p class=MsoNormal><span style='color:black'>Hi Sama,<o:p></o:p></span></p><div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'>Yes I did but I use country DwC-A downloaded from GBIF Portal. I basically follow the instruction on <a href="https://code.google.com/p/ala-portal/wiki/LoadBiocacheData" target="_blank">https://code.google.com/p/ala-portal/wiki/LoadBiocacheData</a>. Precisely it's done inside the ubuntu box.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'>After that I can see indexed records but for now it seems the mapping needs some configuration. I am still looking for configurations.<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'>Did you get the map shown before?<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'>Cheers,<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'>Burke<o:p></o:p></span></p></div><div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div><div><div><div><p class=MsoNormal><span style='color:black'>On May 28, 2014, at 5:43 PM, sama <<a href="mailto:sama@gbif.es" target="_blank">sama@gbif.es</a>> wrote:<o:p></o:p></span></p></div><p class=MsoNormal style='margin-bottom:12.0pt'><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal style='margin-bottom:12.0pt'><span style='color:black'>-----BEGIN PGP SIGNED MESSAGE-----<br>Hash: SHA1<br><br>Dear Burke,<br><br>Have you tried indexing a resource through their DwCA using<br>biocache-store tool on Mac OS?<br><br>Kind Regard.<br>Sama<br>- ------------------------------------------------------------<br>Santiago Martínez de la Riva Vivanco<br>GBIF.ES, Unidad de Coordinación<br>Real Jardín Botánico CSIC<br>Plaza de Murillo, 2<br>28014 Madrid, Spain<br>Tel: +34 91 4293917 x 273 - <a href="mailto:sama@gbif.es" target="_blank">sama@gbif.es</a> - <a href="http://www.gbif.es" target="_blank">www.gbif.es</a> -<br><a href="https://twitter.com/smr_sama" target="_blank">https://twitter.com/smr_sama</a><br><br><br>El 28/05/2014 17:34, Burke Chih-Jen Ko [GBIF] escribió:<o:p></o:p></span></p><p class=MsoNormal style='margin-bottom:12.0pt'><span style='color:black'>Dear list members,<br>(Sorry for cross-posting.)<br><br>I would like to let you know that we've just updated these two pages on the wiki:<br><br>1. Essential tools and environment configurations: <a href="http://dev.gbif.org/wiki/display/ALA/01+Essential+tools+and+environment+configurations" target="_blank">http://dev.gbif.org/wiki/display/ALA/01+Essential+tools+and+environment+configurations</a><br>2. Installation:<br><a href="http://dev.gbif.org/wiki/display/ALA/02+Installation" target="_blank">http://dev.gbif.org/wiki/display/ALA/02+Installation</a><br><br>We are able to install the ALA portal demo by following these steps. Any suggestions on improving the documentation are highly appreciated!<br><br>Cheers,<br><br>Burke<o:p></o:p></span></p><p class=MsoNormal style='margin-bottom:12.0pt'><span style='color:black'>-----BEGIN PGP SIGNATURE-----<br>Version: GnuPG v2.0.22 (MingW32)<br>Comment: Using GnuPG with Thunderbird - <a href="http://www.enigmail.net/" target="_blank">http://www.enigmail.net/</a><br><br>iQEcBAEBAgAGBQJThgQvAAoJEMV2/tf+QnQD3/IH+gPfKtkZy6YMAhOY0xZSVW32<br>cA6mHSqP6kwtxkTPhnNHbLQg83UOMb4WyB7VXgIDuKBYqkzN43TEU6ZmzX66war+<br>PLyn3H1dnks/clAEUYFNqXOPtt4xcUZs2jUG5z9GIqNo6Nw4WOto03Wye5Nbe7qH<br>AXxchdr3JWu4jiJi7OlMtcxgNl2kkkiXB/3mB+e84N82NXmVQdk5wOW5/0hmgBkN<br>xQSWMusX5TxT+k4MRyF7AFzl9GJSp6fIP8nCLQe1VZ7rYdP0d1uIZugDCSkI3kN8<br>pLi+jjd3zQm1cdXT8JjWF78XpUCuqrc+FQl2mYAXEPpVlk3egyMPoWzLWOT23ao=<br>=1lOb<br>-----END PGP SIGNATURE-----<o:p></o:p></span></p></div><p class=MsoNormal><span style='color:black'> <o:p></o:p></span></p></div></div></div></div></div></div></div></body></html>