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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Thanks Daniel.
<div><br>
</div>
<div><span style="font-size: 10pt;">I'd recommend upgrading to 1.1 and I'd recommend installation with the ansible scripts. This will give you base line configuration.</span></div>
<div><span style="font-size: 10pt;">The scripts can be tested on a local machine using vagrant.</span></div>
<div><span style="font-size: 10pt;">The configuration between 1.0 and 1.1 changed significantly - removal of redundant, legacy properties, adoption of standard format for property names.</span></div>
<div>Heres the template used for the configuration file in the ansible scripts:</div>
<div><br>
</div>
<div><a href="https://github.com/gbif/ala-install/blob/master/ansible/roles/biocache-service/templates/config/biocache-config.properties" target="_blank">https://github.com/gbif/ala-install/blob/master/ansible/roles/biocache-service/templates/config/biocache-config.properties</a></div>
<div><br>
</div>
<div>Cheers</div>
<div><br>
</div>
<div>Dave Martin</div>
<div>ALA</div>
<div><br>
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<div id="divRpF371304" style="direction: ltr;"><font face="Tahoma" size="2" color="#000000"><b>From:</b> Daniel Lins [daniel.lins@gmail.com]<br>
<b>Sent:</b> 26 May 2014 15:02<br>
<b>To:</b> Martin, Dave (CES, Black Mountain)<br>
<b>Cc:</b> ala-portal@lists.gbif.org; dos Remedios, Nick (CES, Black Mountain); Pedro Corręa; Nicholls, Miles (CES, Black Mountain)<br>
<b>Subject:</b> Re: [Ala-portal] DwC-A loading problems<br>
</font><br>
</div>
<div></div>
<div>
<div dir="ltr">Hi Dave,
<div><br>
</div>
<div>
<div>When I ran the ingest command (<font size="1" face="courier new, monospace">ingest dr0</font>), the system showed errors like these below. However, after the error messages, I ran the index command (<font size="1" face="courier new, monospace">index dr0</font>),
and data were published on the Portal.<br>
</div>
<div><br>
</div>
<div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,412 ERROR: [Grid] - cannot find GRID: /data/<span><span><span><span><span id="b69cd9af-6b5a-4d38-bf1d-d614676c2685" class="GINGER_SOFTWARE_mark">ala</span></span></span></span></span>/data/layers/ready/diva/worldclim_bio_19</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,414 ERROR: [Grid] -
<span><span><span><span><span id="7a7c2907-16b7-47b7-a202-1b252ee5e6b7" class="GINGER_SOFTWARE_mark">java</span></span></span></span></span><span><span><span><span><span id="f014d573-bf23-4631-9d6f-2bcef6f6eb5e" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="7e16f165-2250-44c1-a90b-0feb31514bd6" class="GINGER_SOFTWARE_mark">io</span></span></span></span></span><span><span><span><span><span id="5b03314f-a99c-49c7-baa7-11890ab7be3b" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>FileNotFoundException:
/data/<span><span><span><span><span id="ebf7647b-7fa8-43a4-b749-12f01969d3dc" class="GINGER_SOFTWARE_mark">ala</span></span></span></span></span>/data/layers/ready/diva/worldclim_bio_19<span><span><span><span><span id="76520497-ccc4-4090-ba5e-a8948216d554" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="7b9a199a-1de1-4d30-980e-2ce3dfdbc65c" class="GINGER_SOFTWARE_mark">gri</span></span></span></span></span>
(No such file or directory)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="44127f31-e431-42ba-957b-2e92f92f59c2" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span>
<span><span><span><span><span id="98c67e3e-42f6-4bf4-b62b-5a4a92780309" class="GINGER_SOFTWARE_mark">java</span></span></span></span></span><span><span><span><span><span id="7428c0e0-58bb-4957-9a06-398e34623776" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="daceb63f-312b-4c5c-af77-5d536e90c2aa" class="GINGER_SOFTWARE_mark">io</span></span></span></span></span><span><span><span><span><span id="e55880f6-ab6d-46e5-8f51-ad4281eb0633" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>RandomAccessFile<span><span><span><span><span id="bd8943f2-c014-486b-9567-8f8cabf37821" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>open<span><span><span><span><span id="5a44095c-46a1-486b-86c4-48edf5a8b7cb" class="GINGER_SOFTWARE_mark">(</span></span></span></span></span>Native
Method)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="a145a9a5-b723-44c4-ba1e-fdb2d2382580" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span>
<span><span><span><span><span id="e4b0e79c-152a-4eff-b92e-e14832b0b2d5" class="GINGER_SOFTWARE_mark">java</span></span></span></span></span><span><span><span><span><span id="633436b6-6ce3-44b8-80e9-183ae03d8313" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="99fbd083-7c4a-4cf7-a578-f4a45ac69c3d" class="GINGER_SOFTWARE_mark">io</span></span></span></span></span><span><span><span><span><span id="13002e5c-33a7-4e7c-9dac-054b2604ea7c" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>RandomAccessFile.<<span><span><span><span><span id="fc739fab-4e59-49f5-8c7a-ac407f058fe6" class="GINGER_SOFTWARE_mark">init</span></span></span></span></span>>(RandomAccessFile.java<span><span><span><span><span id="52a241e1-ebb8-4771-b09c-ad5ab769190b" class="GINGER_SOFTWARE_mark">:</span></span></span></span></span>241)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="f796619e-a5c9-4d60-b909-0b318e0531e6" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span>
<span><span><span><span><span id="f90d308b-f332-4444-9fff-1cd6dd61eb72" class="GINGER_SOFTWARE_mark">java</span></span></span></span></span><span><span><span><span><span id="19f6f31b-40da-4114-96d5-89fb8cc13880" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="bcd511c9-f9a4-4413-84a5-15b39be94969" class="GINGER_SOFTWARE_mark">io</span></span></span></span></span><span><span><span><span><span id="bf3d29fa-4107-4bb4-8a91-206628af65b8" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>RandomAccessFile.<<span><span><span><span><span id="961202bf-36f0-48f4-828e-2f2463caecf7" class="GINGER_SOFTWARE_mark">init</span></span></span></span></span>>(RandomAccessFile.java<span><span><span><span><span id="c023d23c-d7fb-4b4f-a275-6f9d837b9db0" class="GINGER_SOFTWARE_mark">:</span></span></span></span></span>122)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="abec7ad0-5667-4828-bf8f-1585eaf8bfb1" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span> org<span><span><span><span><span id="ce949711-d214-4633-84da-7dbd773508d9" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="534be6af-25a3-4958-97ab-76a681102c9e" class="GINGER_SOFTWARE_mark">ala</span></span></span></span></span><span><span><span><span><span id="c0054638-45cf-422b-9b43-5200ebce5900" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>layers<span><span><span><span><span id="10b6ce66-747c-4925-bbde-0e6d1d2a31dd" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>intersect<span><span><span><span><span id="b4b52fce-7d81-4869-882e-8720b6a86442" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>Grid<span><span><span><span><span id="540563b1-91b6-4c67-ac1c-4b379a496f22" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>getValues3<span><span><span><span><span id="778a3057-4411-49a9-8893-00554f794a3a" class="GINGER_SOFTWARE_mark">(</span></span></span></span></span>Grid.java<span><span><span><span><span id="711dfccd-3c35-4a2e-be35-6f2190703de2" class="GINGER_SOFTWARE_mark">:</span></span></span></span></span>1017)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="1c7ee2dd-1ab3-4c35-83b9-22c105b6b530" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span> org<span><span><span><span><span id="6e203341-c7a1-46ad-9508-131ef77ab52a" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="738fa994-a313-4291-9283-c2a59b803f3e" class="GINGER_SOFTWARE_mark">ala</span></span></span></span></span><span><span><span><span><span id="e88c2fd1-868d-45c4-9a21-a443779feb7b" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>layers<span><span><span><span><span id="441b2ba5-b3ad-428d-a4fc-4973bc2d2c70" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>intersect<span><span><span><span><span id="bf2c0921-bf5e-4c21-a17d-bd505e6d8a08" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>SamplingThread<span><span><span><span><span id="834ff311-4d59-42f8-85de-1a26f21edb8f" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="aa930c7d-b3d1-4466-82d1-8bc9def144d7" class="GINGER_SOFTWARE_mark">intersectGrid</span></span></span></span></span><span><span><span><span><span id="b62ae70d-0ead-4bab-84cc-0699b25013e1" class="GINGER_SOFTWARE_mark">(</span></span></span></span></span>SamplingThread.java<span><span><span><span><span id="c9c5a635-a1f2-4bc4-97ba-a560d6226e95" class="GINGER_SOFTWARE_mark">:</span></span></span></span></span>112)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="e04b930b-286a-4f80-a481-a8a390db1eff" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span> org<span><span><span><span><span id="0b63ef8a-c768-46df-83dd-44106d185bc3" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="5b16f19b-5b8b-4570-95f9-3aab1df270c0" class="GINGER_SOFTWARE_mark">ala</span></span></span></span></span><span><span><span><span><span id="f24c4b06-a784-4544-9757-c1666287b0ed" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>layers<span><span><span><span><span id="2e0a05d6-bbed-4f5a-917c-077278ccb8aa" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>intersect<span><span><span><span><span id="2be2d552-fcf0-46c2-a843-4c5f1375fb2e" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>SamplingThread<span><span><span><span><span id="97acd787-93c5-4cc2-ae77-6fbf1fdb137a" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>sample<span><span><span><span><span id="dcf99cb5-d2de-4b30-9234-886c13b7b9f4" class="GINGER_SOFTWARE_mark">(</span></span></span></span></span>SamplingThread.java<span><span><span><span><span id="aeba66f5-482f-48d0-a048-d2707d1c189e" class="GINGER_SOFTWARE_mark">:</span></span></span></span></span>97)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span><span><span id="2ee5d006-4e2d-4258-9ace-15565e845a15" class="GINGER_SOFTWARE_mark">at</span></span></span></span></span> org<span><span><span><span><span id="c467fa8c-41db-4e9e-a681-33b011dfb51c" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="1e67da93-b591-413d-8b8e-d286e7e0f456" class="GINGER_SOFTWARE_mark">ala</span></span></span></span></span><span><span><span><span><span id="06cfd3d2-02eb-449e-87ac-c837e15244e5" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>layers<span><span><span><span><span id="90c026f0-41a1-4b02-81be-e8a8a745dfe9" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>intersect<span><span><span><span><span id="badd3d5b-9238-41ce-a7a2-158c981600d8" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>SamplingThread<span><span><span><span><span id="063a4e5c-e55d-4b92-a767-85d3017814d6" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span>run<span><span><span><span><span id="4ee5a10f-1c03-4895-b378-e2b1e3e294f9" class="GINGER_SOFTWARE_mark">(</span></span></span></span></span>SamplingThread.java<span><span><span><span><span id="0905a7d3-b0bb-4d56-95bb-c3a8a7bb1e47" class="GINGER_SOFTWARE_mark">:</span></span></span></span></span>67)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,447 INFO<span><span><span><span><span id="9c96eff6-5bea-4e69-998c-2157921e6381" class="GINGER_SOFTWARE_mark"> :</span></span></span></span></span> [Sampling] - ********* END - TEST BATCH
SAMPLING FROM FILE ***************</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,496 INFO<span><span><span><span><span id="e961aad9-f392-40db-b180-4d6bb7fda46b" class="GINGER_SOFTWARE_mark"> :</span></span></span></span></span> [Sampling] - Finished loading: /tmp/sampling-dr0<span><span><span><span><span id="d03f4d10-02b1-45aa-98e9-2574394b305c" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="e736ad2a-cbe6-44ec-aa09-fa809597afec" class="GINGER_SOFTWARE_mark">txt</span></span></span></span></span>
in 49ms</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,496 INFO<span><span><span><span><span id="924bab82-88cc-49eb-a965-0d20a1056b1a" class="GINGER_SOFTWARE_mark"> :</span></span></span></span></span> [Sampling] - Removing temporary file: /tmp/sampling-dr0<span><span><span><span><span id="ff7d2ff9-5e6a-46d2-b577-bf8c0ab2cb80" class="GINGER_SOFTWARE_mark">.</span></span></span></span></span><span><span><span><span><span id="5cfea201-f838-4b81-a11c-e3925c717a7d" class="GINGER_SOFTWARE_mark">txt</span></span></span></span></span></font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,553 INFO<span><span><span><span><span id="26c15d50-a221-4a0a-ac4d-9b878137adf3" class="GINGER_SOFTWARE_mark"> :</span></span></span></span></span> [Consumer] -
<span><span><span><span><span id="d82093ed-fa27-4d24-8539-2bb8d84147c3" class="GINGER_SOFTWARE_mark">Initialising</span></span></span></span></span> thread: 0</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,575 INFO<span><span><span><span><span id="a05361cd-e65e-4840-8df8-77c6bfdcabe1" class="GINGER_SOFTWARE_mark"> :</span></span></span></span></span> [Consumer] -
<span><span><span><span><span id="64cff06d-63d2-42cc-8df8-75764ba0614d" class="GINGER_SOFTWARE_mark">Initialising</span></span></span></span></span> thread: 1</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,575 INFO<span><span><span><span><span id="cb37fcef-cbd5-48f2-9948-e65d9642cb65" class="GINGER_SOFTWARE_mark"> :</span></span></span></span></span> [Consumer] -
<span><span><span><span><span id="cb4439b7-d8fb-40a8-a793-3542a81feaec" class="GINGER_SOFTWARE_mark">Initialising</span></span></span></span></span> thread: 2</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,577 INFO<span><span><span><span id="a274a5bc-6952-4d22-b8b7-f175f0ad37e6" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - In thread: 0</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,579 INFO<span><span><span><span id="37cd23af-884a-4318-8f68-fc2067646414" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] -
<span><span><span><span id="65039062-baa2-4b7a-a00d-472a9e92c6e9" class="GINGER_SOFTWARE_mark">Initialising</span></span></span></span> thread: 3</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,579 INFO<span><span><span><span id="2f57a837-98bd-451d-855b-0d79ade026b6" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [ProcessWithActors] - Starting with dr0|
<span><span><span><span id="b740c470-a603-4e63-86d7-27afac33a956" class="GINGER_SOFTWARE_mark">endingwith</span></span></span></span> dr0|~</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,581 INFO<span><span><span><span id="b7546203-2add-4ae2-92be-d1ad58219823" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - In thread: 2</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,581 INFO<span><span><span><span id="ca771173-6463-4c03-a5ae-6b78682cb1f1" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - In thread: 1</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,584 INFO<span><span><span><span id="454f9606-7e32-4c42-9c34-2d381ee8d970" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - In thread: 3</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,592 INFO<span><span><span><span id="a87c82d1-70b1-4f2b-b5f0-a196b48bad55" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [ProcessWithActors] -
<span><span><span><span id="839c1525-bac4-452d-8b0c-ed7e5b2b10e5" class="GINGER_SOFTWARE_mark">Initialised</span></span></span></span> actors...</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,647 INFO<span><span><span><span id="ff49fb5f-5db8-4c97-b89d-bb6570384043" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [ProcessWithActors] - First
<span><span><span><span id="8e830499-b77b-4c83-9756-c68f7f8a7c57" class="GINGER_SOFTWARE_mark">rowKey</span></span></span></span> processed: dr0|urn<span><span><span><span id="0b03388d-5e91-41ca-adf8-55e42a7fdac1" class="GINGER_SOFTWARE_mark">:</span></span></span></span><span><span><span><span id="bdb28527-77cb-4dda-9134-210e40279a37" class="GINGER_SOFTWARE_mark">lsid</span></span></span></span><span><span><span><span id="5a1e9b33-f3f2-4ad7-82dd-2481acd43b03" class="GINGER_SOFTWARE_mark">:</span></span></span></span><span><span><span><span id="337833fd-8554-4dd1-ac32-edf8ec5baede" class="GINGER_SOFTWARE_mark">icmbio</span></span></span></span><span><span><span><span id="091c279d-7cb3-4edf-b396-a4dd2bf5061f" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="bcf0c99f-4b91-4058-a02d-da407e47a184" class="GINGER_SOFTWARE_mark">gov</span></span></span></span><span><span><span><span id="2ded5df7-5148-4c77-bcc8-5f285f87a833" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="92548573-a4cb-4eab-9e59-09acff152c48" class="GINGER_SOFTWARE_mark">br</span></span></span></span><span><span><span><span id="e921c074-3918-482a-b88c-13106dd7e2aa" class="GINGER_SOFTWARE_mark">:</span></span></span></span><span><span><span><span id="370c531f-c3a6-42ee-802e-62850c3c548f" class="GINGER_SOFTWARE_mark">icmbio</span></span></span></span><span><span><span><span id="1142b450-4442-42dd-8189-6ee6bacc2e29" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="c42e7ba7-ad8e-45b7-92ae-75ce6e264835" class="GINGER_SOFTWARE_mark">parnaso</span></span></span></span><span><span><span><span id="7e21b228-a829-4375-9c6d-ebf879b10b65" class="GINGER_SOFTWARE_mark">.</span></span></span></span>occurrence<span><span><span><span id="1c53d476-7512-460f-94b8-83a9cc2b7a61" class="GINGER_SOFTWARE_mark">:</span></span></span></span>MA120999</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:05,998 INFO<span><span><span><span id="eec8169b-3ae0-4af5-a858-04234f692611" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [ProcessWithActors] - Last row key processed: dr0|urn<span><span><span><span id="15dcc95d-fcdc-4d5c-9382-396824d9be6d" class="GINGER_SOFTWARE_mark">:</span></span></span></span><span><span><span><span id="3060702e-6196-49f3-853c-be2d3cade4f4" class="GINGER_SOFTWARE_mark">lsid</span></span></span></span><span><span><span><span id="736e70b0-f51b-47d7-88ca-f1af6348ac3a" class="GINGER_SOFTWARE_mark">:</span></span></span></span><span><span><span><span id="50ea137b-e208-4002-a0ec-0a76d11fa891" class="GINGER_SOFTWARE_mark">icmbio</span></span></span></span><span><span><span><span id="b0f3d094-8451-4c59-bc1d-e474dfc27023" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="37d7fc41-f359-4f45-a985-6fc7931e0c13" class="GINGER_SOFTWARE_mark">gov</span></span></span></span><span><span><span><span id="682e5fec-af33-49ed-9542-67888ac49806" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="ffa2b8ff-dbbf-477c-9f3c-524f65c65908" class="GINGER_SOFTWARE_mark">br</span></span></span></span><span><span><span><span id="d0c42637-d8d5-47ea-a5c5-ed83cd50fa78" class="GINGER_SOFTWARE_mark">:</span></span></span></span><span><span><span><span id="d89f1427-798a-4983-83ee-1f6dad7ae36e" class="GINGER_SOFTWARE_mark">icmbio</span></span></span></span><span><span><span><span id="55819fe8-0565-4233-bb84-e2628f28423e" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="01826782-9437-46bf-a7d0-a30382dec9f0" class="GINGER_SOFTWARE_mark">parnaso</span></span></span></span><span><span><span><span id="6715ad6e-7200-444f-8270-75945317369b" class="GINGER_SOFTWARE_mark">.</span></span></span></span>occurrence<span><span><span><span id="6b97b4f8-6544-44dd-bd14-d7c499b17c18" class="GINGER_SOFTWARE_mark">:</span></span></span></span>MA99991</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:06,006 INFO<span><span><span><span id="6a0d1194-e07e-4183-9943-567b4cc384d1" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [ProcessWithActors] - Finished.</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:06,015 INFO<span><span><span><span id="42095c8d-04ec-4706-9f48-2a38da1d7f77" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [AttributionDAO] - Calling web service for dr0</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:06,017 INFO<span><span><span><span id="8c1245d7-24b1-4263-8046-9952eae10487" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - Killing (Actor<span><span><span><span id="81790434-6d48-48d7-9975-138c740a1bd3" class="GINGER_SOFTWARE_mark">.</span></span></span></span>act)
thread: 3</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:06,016 INFO<span><span><span><span id="e9954aec-19fd-4409-90fc-29c47bacf782" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - Killing (Actor<span><span><span><span id="5c74b3f1-9f93-4595-8cf3-594636fd4ee0" class="GINGER_SOFTWARE_mark">.</span></span></span></span>act)
thread: 2</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:06,015 INFO<span><span><span><span id="aee4b72a-2117-4173-9ebd-abf875ec3625" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - Killing (Actor<span><span><span><span id="cb46cd85-2401-4221-9fe7-cf330d978b93" class="GINGER_SOFTWARE_mark">.</span></span></span></span>act)
thread: 1</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:06,289 INFO<span><span><span><span id="2b636196-2205-44bf-adfe-6512a489e62f" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [AttributionDAO] - Looking up
<span><span><span><span id="1ca485d5-f372-4dd2-bf8a-0eb3de3d459f" class="GINGER_SOFTWARE_mark">collectory</span></span></span></span> web service for ICMBIO|PARNASO</font></div>
<div><font size="1" face="courier new, monospace">May 20, 2014 2:15:10 PM org<span><span><span><span id="4518f541-8c70-45fe-9934-766ce3143559" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="fe82e656-cc86-4eaa-9fe9-c2486a545902" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="711f404c-f651-4e34-abab-1de0fe2b3a3f" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="6dcd9a8b-d29f-405d-8bed-ab24120df07a" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="7a31b6e2-bf84-4426-9f8b-52a1fad4f900" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="cde7a3b0-da69-4270-9a32-8a84033303fc" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="c6e54a22-6844-49fd-908c-01576430dd1c" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedEpsgFactory
<<span><span><span><span id="72d521b2-6804-49dd-ad95-038b23755c39" class="GINGER_SOFTWARE_mark">init</span></span></span></span>></font></div>
<div><font size="1" face="courier new, monospace">INFO: Setting the EPSG factory org<span><span><span><span id="1808d08c-8692-48a7-a006-bc2995ecaec4" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="f0bf2833-090f-4dd6-a0f9-b3468077cbe6" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="9602f52c-b353-422b-a2e5-e1cdd0088d58" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="5ee38612-5256-42c4-a0a0-0340753f4441" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="cda8e5f6-0606-4336-ae3e-3764f09c4c8d" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="3bc6eeb6-3cd7-4b8f-bbbb-685e6f700e6a" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="34a185e2-9332-4a74-a3ea-b75c02db6a97" class="GINGER_SOFTWARE_mark">.</span></span></span></span>DefaultFactory
to a 1800000ms timeout</font></div>
<div><font size="1" face="courier new, monospace">May 20, 2014 2:15:10 PM org<span><span><span><span id="cd15b809-ab6b-4dae-9e6c-b74abfb7378a" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="500657ce-e0f3-4bf1-96ca-2eda87b3dd71" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="8fcc755a-6a9f-4a8f-a914-3e7dba334a00" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="a651adcd-726e-4058-8df4-d8cc07af11ea" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="f0776114-ccdc-4e9a-9dd2-84d3be8c5c02" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="c7ad5576-d06d-47a2-800a-7326b5fef6b1" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="19e7b16a-3e3d-48ee-b8bf-095c03549707" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedEpsgFactory
<<span><span><span><span id="04e4fdde-fe64-42de-a4a6-1224f0196c75" class="GINGER_SOFTWARE_mark">init</span></span></span></span>></font></div>
<div><font size="1" face="courier new, monospace">INFO: Setting the EPSG factory org<span><span><span><span id="c8dfe0e9-f872-404d-b650-f1ae167edb78" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="bb810c00-3183-43f7-8e1a-32b6a41f1a8c" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="f64fe33d-a354-46b0-a7f6-5ca2e5ac7385" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="0c5999cd-4d00-434a-ba20-4e027ba3d0d2" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="97d1ad00-9816-4e51-bd0e-0a2f261dd7c4" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="83d4b13b-c98e-4e8a-9a46-2e83aebd9fe5" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="ca31056e-c119-4569-9d34-3a6742bd442a" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedHsqlEpsgFactory
to a 1800000ms timeout</font></div>
<div><font size="1" face="courier new, monospace">May 20, 2014 2:15:10 PM org<span><span><span><span id="51588726-c24a-4473-8071-1a5f18a04c26" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="1c9d96dc-b5fa-452a-aac9-25abf074e5d1" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="ba35af9f-90c1-48c1-bc73-bfe5e82ebbea" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="196570b1-9889-4cc9-8af6-9f9d4150f3a1" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="41bd265e-8bc5-4bae-ad71-8791edb0cf63" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="b1f9809d-3e6e-45a2-bfb5-3508408ea920" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="d429f24e-1b8c-486b-bf78-eefa818c2c86" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedHsqlEpsgFactory
<span><span><span><span id="b91cde8c-1666-4f9b-a0c6-a5673846ae0f" class="GINGER_SOFTWARE_mark">createDataSource</span></span></span></span></font></div>
<div><font size="1" face="courier new, monospace">INFO: Building new data source for org<span><span><span><span id="bb4e1c5a-0338-4ec2-a503-ebec7d715955" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="473ca66d-034c-46c3-93c6-5353e51955a5" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="b034c0f5-3531-4ee9-8e61-24361feb306e" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="7583e18d-4616-4be4-a26d-3b0cc9199aa4" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="6f6ca2db-72cc-4294-b673-deabed2467eb" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="3f88decb-4e34-41f1-bdc9-0d762a539a5b" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="40baec23-4d1c-410b-87df-1490395a5bb1" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedHsqlEpsgFactory</font></div>
<div><font size="1" face="courier new, monospace">May 20, 2014 2:15:10 PM org<span><span><span><span id="a060c35e-2adb-4272-bb70-7cf87bdb888a" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="d92e8fa2-fc27-49b2-8a1d-11a14e7e4484" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="594ad245-ca4a-43fe-aa72-87326d2ec844" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="12958db6-1202-46c8-be84-eaed656d1659" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="ba229e33-5660-4880-ac50-b3da03cba262" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="e7f578bc-492a-49a4-8732-deb2748b12d0" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="3e82dbdc-15ba-4d40-a22f-2dbd1d6f6700" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedHsqlEpsgFactory
<span><span><span><span id="781c662d-5a85-44e3-a2f5-8bc21af97f0e" class="GINGER_SOFTWARE_mark">createBackingStore</span></span></span></span></font></div>
<div><font size="1" face="courier new, monospace">INFO: Building backing store for org<span><span><span><span id="4660fcde-a612-4fdc-8cfe-be3c539f94c1" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="73a7aa1f-3984-47d9-9a6f-a55ad5cfdf3d" class="GINGER_SOFTWARE_mark">geotools</span></span></span></span><span><span><span><span id="2d5b432d-b19d-4e27-a417-0b248130cc63" class="GINGER_SOFTWARE_mark">.</span></span></span></span>referencing<span><span><span><span id="0d7e33bb-d93f-4db2-b0e7-eb061d56d065" class="GINGER_SOFTWARE_mark">.</span></span></span></span>factory<span><span><span><span id="b5ff824e-73de-49fc-85af-60030d4b0448" class="GINGER_SOFTWARE_mark">.</span></span></span></span><span><span><span><span id="513d872f-6455-4b81-84f4-73cfced22b9c" class="GINGER_SOFTWARE_mark">epsg</span></span></span></span><span><span><span><span id="d6bd8a37-fadc-44bc-a7a5-5b2f8355efa8" class="GINGER_SOFTWARE_mark">.</span></span></span></span>ThreadedHsqlEpsgFactory</font></div>
<div><font size="1" face="courier new, monospace">2014-05-20 14:15:32,105 INFO<span><span><span><span id="14f57865-7eed-4d60-882c-26dd6d7022c8" class="GINGER_SOFTWARE_mark"> :</span></span></span></span> [Consumer] - Killing (Actor<span><span><span><span id="4dda9648-7f73-44ec-b68d-e685ef9babe6" class="GINGER_SOFTWARE_mark">.</span></span></span></span>act)
thread: 0</font></div>
<div><font size="1" face="courier new, monospace">Indexing live with URL: null, and
<span><span><span id="7ba88d61-c2a3-411d-add0-1312cd0ea57c" class="GINGER_SOFTWARE_mark">params</span></span></span>: null&dataResource=dr0</font></div>
<div><font size="1" face="courier new, monospace"><span><span><span id="88e42906-93e0-457c-aa3e-206f6f249879" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="51e8d054-a607-4f53-8ee7-659a5976ffd6" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="54703748-405f-4d4f-9fe4-576532151dc8" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="56081f62-1650-4be1-9104-c4ed7f74f2e1" class="GINGER_SOFTWARE_mark">.</span></span></span>NullPointerException</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span id="b010277b-8ddc-4f81-bea0-28264f9b6e6f" class="GINGER_SOFTWARE_mark">at</span></span> au.org.ala.util.CMD$.au$org$ala$util$CMD$$indexDataResourceLive$1(CommandLineTool.scala:371)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span id="a52188be-b759-44c8-8f98-72ba67c58c1a" class="GINGER_SOFTWARE_mark">at</span></span> au.org.ala.util.CMD$$anonfun$executeCommand$2.apply(CommandLineTool.scala:90)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span id="e0deb83c-99bc-49ea-adaa-65b2be797b31" class="GINGER_SOFTWARE_mark">at</span></span> au.org.ala.util.CMD$$anonfun$executeCommand$2.apply(CommandLineTool.scala:86)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="8c4805d1-e21b-451f-9a6f-5631e49da879" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="1a19e256-83cb-44c8-be72-b4a84210a850" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="437d5607-9298-4d29-98f6-d9663de43b54" class="GINGER_SOFTWARE_mark">.</span></span></span>collection<span><span><span id="7bab334a-4cb5-45e4-955b-05086ce5e4a8" class="GINGER_SOFTWARE_mark">.</span></span></span>IndexedSeqOptimized$class<span><span><span id="9486f317-9c46-4cba-a255-bdc6b53f0e78" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="035a3d5a-61cf-481b-a457-3db1d2b275c8" class="GINGER_SOFTWARE_mark">foreach</span></span></span><span><span><span id="62fae51b-7281-43c5-ab29-2a3c616e4321" class="GINGER_SOFTWARE_mark">(</span></span></span>IndexedSeqOptimized<span><span><span id="f2816557-a01e-4434-bda9-716c3641c255" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="ca9bf590-5323-47bb-ae21-0d757bf8ce92" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="33ce02ac-0ebf-493d-a303-cb3398f9a4c0" class="GINGER_SOFTWARE_mark">:</span></span></span>33)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="5996291a-7656-4cd0-8557-f81deaca3291" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="cf6d5966-a917-4af6-8a74-786663b75a44" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="441ef5ae-eda5-4f16-9a33-9b1574ff45f7" class="GINGER_SOFTWARE_mark">.</span></span></span>collection<span><span><span id="f4442edf-4477-42cb-a6e4-87298d5a42b1" class="GINGER_SOFTWARE_mark">.</span></span></span>mutable<span><span><span id="a91b7d3c-fe54-4da5-b6df-f6d2a83ff109" class="GINGER_SOFTWARE_mark">.</span></span></span>ArrayOps$ofRef<span><span><span id="fc1d7ba5-2f71-48bf-b78c-78ec0d7e3558" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="551e399b-bd5c-461b-bbf2-11653f328db5" class="GINGER_SOFTWARE_mark">foreach</span></span></span><span><span><span id="b83045c2-2764-4db5-8785-1bc19d8789a7" class="GINGER_SOFTWARE_mark">(</span></span></span>ArrayOps<span><span><span id="0b041cf1-bdf6-43fd-acad-f495ad008d76" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="cc694b81-2a2e-4f94-a563-8a03949408f3" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="0dc5a4bf-148d-4ed4-80e1-0cebb07c084a" class="GINGER_SOFTWARE_mark">:</span></span></span>105)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="e4059fb4-1381-463e-b4dc-16e107db0118" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.util.CMD$.executeCommand(CommandLineTool.scala:86)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="7e5a0e7f-9a23-43b8-b599-3dc837a8474e" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.util.CommandLineTool$.main(CommandLineTool.scala:26)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span id="aa174ae7-4501-4990-a6bf-1c7f27923731" class="GINGER_SOFTWARE_mark">at</span></span> au.org.ala.util.CommandLineTool.main(CommandLineTool.scala)</font></div>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div>Nowadays we use the<b> <span id="2a455593-e91d-464d-a22d-0fcef514434c" class="">
<span id="aeafff65-0015-4101-a8e6-e8522df55268" class="GINGER_SOFTWARE_mark">biocache</span></span>-1.0-SNAPSHOT</b> in our environment. But in your last mail you mentioned the version
<b></b><b><span id="4a9c79e9-4016-4840-b7ea-4ed49ede10a7" class=""><span id="b9d76bcf-3ee7-40cd-b2c2-c23b9c3fd7d1" class="GINGER_SOFTWARE_mark">biocache</span></span>-1.1-assembly</b>.<br>
</div>
<div><br>
</div>
<div>I did download of this newer <span><span><span id="147819c8-0d3f-48a8-bf8c-684e438b8e6c" class="">version, but</span></span></span> when I ran it (<font face="courier new, monospace">ingest dr0</font>) in our environment the system showed many errors (see
below).</div>
<div><br>
</div>
<div><br>
</div>
<div><span style="font-family:'courier new',monospace; font-size:x-small">log4j:WARN custom level class [org</span><span style="font-family:'courier new',monospace; font-size:x-small"><span id="26371ed5-e18d-496e-830b-4624feb0089e" class="GINGER_SOFTWARE_mark">.</span></span><span style="font-family:'courier new',monospace; font-size:x-small"><span id="7563b662-4267-4d4e-9012-9a10a3a93e21" class="GINGER_SOFTWARE_mark">ala</span></span><span style="font-family:'courier new',monospace; font-size:x-small"><span id="3df56226-6923-495c-bc4c-a9d4acc533f6" class="GINGER_SOFTWARE_mark">.</span></span><span style="font-family:'courier new',monospace; font-size:x-small">client</span><span style="font-family:'courier new',monospace; font-size:x-small"><span id="95d086d8-2c30-4359-846b-b74b5d47bc6d" class="GINGER_SOFTWARE_mark">.</span></span><span style="font-family:'courier new',monospace; font-size:x-small"><span id="d8449b04-27dd-4ab2-89c8-cc439c66b86c" class="GINGER_SOFTWARE_mark">appender</span></span><span style="font-family:'courier new',monospace; font-size:x-small"><span id="4683f409-1b07-440f-93ff-2ea6e2fe7bd7" class="GINGER_SOFTWARE_mark">.</span></span><span style="font-family:'courier new',monospace; font-size:x-small">RestL</span><span style="font-family:'courier new',monospace; font-size:x-small">evel]
not found.</span><br>
</div>
</div>
<div>
<div><font size="1" face="courier new, monospace">Exception in thread "main" <span>
<span><span id="71822f72-0056-4157-85b5-40f201c50a44" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="aeeafd89-af79-4370-a295-f5c054fb9e74" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="1d49adfa-37b5-45c8-a702-29135c3490b2" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="7d2a1111-c272-4637-8134-15478b53c31d" class="GINGER_SOFTWARE_mark">.</span></span></span>ExceptionInInitializerError</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="d724c1f7-5b71-443e-a008-d567b19b9929" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.load.DataLoader$class.$init$(DataLoader.scala:28)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="81dea65b-c54b-4bea-bbc9-6f1b572342b0" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.load.Loader.<<span><span><span id="f6f222b9-a4d2-4ec3-a704-6d73c6d3f9e9" class="GINGER_SOFTWARE_mark">init</span></span></span>>(Loader<span><span><span id="d94c01dc-f16a-4164-bcfe-e935a1a3d4ac" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="cd6652eb-6690-413a-9ba8-db95f7b76298" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="f12635fa-1f01-4459-a0b9-d42b79f344ff" class="GINGER_SOFTWARE_mark">:</span></span></span>34)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="d065d204-b567-48ae-b1e5-699669fc3b5f" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.cmd.CMD$.executeCommand(CMD.scala:29)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="374900f9-2018-4d46-bddd-1f0bdc630541" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.cmd.CommandLineTool$.main(CommandLineTool.scala:22)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="3f12bba8-d052-4b57-8e0d-c09a7a93fee7" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.cmd.CommandLineTool.main(CommandLineTool.scala)</font></div>
<div><font size="1" face="courier new, monospace">Caused by: <span><span><span id="5b3e51d7-4ecb-4469-913c-dd39c2803012" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="a918843f-60a5-493e-9c60-bdc5bc88142b" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="3389d458-2e2b-474f-b7dd-e1602194a309" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="cab4f439-3b7a-4a5f-881c-c44645dea1d5" class="GINGER_SOFTWARE_mark">.</span></span></span>CreationException:
Guice creation errors:</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">1) No implementation for <span>
<span><span id="5f669144-59fe-4a12-904f-203f57b3b469" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="b2d3b766-cd5a-4f72-8fb2-5e76055d2256" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="a2ac7c5a-dcb2-4328-86c4-391401a22d0f" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="cb9983f6-617f-46ca-9e7c-d57c9c3f3e04" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="d9df28b1-111c-47b2-aa5a-be9a5c8795de" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="838acee4-be63-4bc5-9389-d273a892480a" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="33f4854a-a1d1-4569-892d-2c779ec6d912" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="3f1a9da6-7b90-4c7d-9483-a8c63a699c89" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="878aed68-6a83-4d73-a8ca-0207498a619e" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="b012cbfa-3ab8-4771-8f57-daedb944bc7c" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="3baada6c-be41-4248-8a5e-255a94029fdf" class="GINGER_SOFTWARE_mark">.</span></span></span>max<span><span><span id="0cdae32f-502b-45b8-9076-cb5960c771c4" class="GINGER_SOFTWARE_mark">.</span></span></span>connections)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="3a638b2c-e94f-451a-b26d-5ff62dd65e42" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="f2554f35-0558-4b33-950c-5201abe21cb0" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="2294857a-e720-4846-8995-2d6f0f87edb2" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="845866e6-0ac4-4969-991d-3eb3eb544f13" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="e5c9bd29-c665-46df-aa92-0f8c38d4b8fe" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="7ddba853-0220-4c1e-8d99-1360237da35c" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="87bd4d30-965d-4f63-9b98-078f11722fba" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="a6692caf-50b5-4fa1-8b77-54c58e36da3c" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="b45fe4a1-1b8a-4e6d-bd91-3c6f5091137b" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="70626e87-3178-4229-8596-c2996fc7b8b1" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="d810bb10-ed9a-403f-90f5-5e3c95a4b613" class="GINGER_SOFTWARE_mark">.</span></span></span>max<span><span><span id="9c37c36a-641d-42d3-9539-aaabdcc03321" class="GINGER_SOFTWARE_mark">.</span></span></span>connections)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="c5d052f6-c753-4cc1-bb52-bb7ae9fc7e3d" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 4 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="fc865c51-3b4a-43f6-8d94-89248757f669" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="feb5240d-e87f-4978-bc87-f79ebc8f46fd" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="3a1a14d7-b5ff-4bb0-b8f8-7bcefcd974ca" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="13bafd56-b291-4ef2-a824-df43c24fa0c8" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="f10b4d85-1c88-4cb7-80e1-5c3c3ff854eb" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">2) No implementation for <span>
<span><span id="710f1591-12bf-4258-8086-864614ec0c7a" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="d876eacc-26d3-47fa-805e-08bc340cd8c5" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="eb5276b1-8b68-4eba-9b9a-e36ab15043df" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="720a6d55-bf20-46c0-ac03-b61fc9aa5813" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="29618277-1294-41bc-bde7-8c27594f7990" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="4200456b-5790-43e9-ac28-0e33e95d3a12" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="ed1d6f94-4b5a-4bf2-a9e0-058240bb75f3" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="4944ee2b-8792-4f36-b4d3-f1d6cf72de49" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="43540fb6-bbb4-42e8-8728-1d551166982f" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="b0e76ac9-adf4-4c6f-b057-09a251ae34f8" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="ea068651-0bc7-4e8c-b325-4c86b43f0a5e" class="GINGER_SOFTWARE_mark">.</span></span></span>max<span><span><span id="98c2e24b-1c7e-4ed0-8714-c2aceec9fb55" class="GINGER_SOFTWARE_mark">.</span></span></span>retries)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="28a548c0-db25-4506-bc59-12e287dcc218" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="f799e275-db0c-490b-b7f0-b05e018eb28f" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="f9d6ae79-9507-4a2b-8829-1c3f259158af" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="95b14728-d896-4d1b-b627-d87fd9ee635c" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="9782bb56-1dff-4446-ab90-f208c82c9343" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="fd894b32-7f21-48af-9302-915b9d4a16ca" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="5c49421b-3298-4686-a077-3feb955d8c1a" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="1f37f096-1382-482c-8a2f-928faded2042" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="d919caaf-f262-43c0-bccf-d749379e3f13" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="c3ec3bcb-e7b6-48cb-8d5b-8d2e39fa5fbe" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="6045d03a-e992-41e2-a2d0-1ab9e2e9a597" class="GINGER_SOFTWARE_mark">.</span></span></span>max<span><span><span id="6582400d-8031-4444-b44a-a904aca4ee5a" class="GINGER_SOFTWARE_mark">.</span></span></span>retries)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="994ea3ff-672b-42f4-919b-3d9ebddf1664" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 5 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="e9eadbbb-c81f-4b12-add5-7e784ee6bd51" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="11058965-24f5-4f68-9fe3-643b10babc3e" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="1a80cc7b-9484-4e9d-ab10-659a515cd880" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="522df12c-ec11-4472-bf10-5f6dda0632e0" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="b9a7f649-0e76-4626-8c72-7f186de5e08d" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">3) No implementation for <span>
<span><span id="a920eec0-8e8f-4dcf-9134-ce3da3cb44db" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="8e023e82-6e88-4c9a-aea5-9ad1bd930d35" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="39376a59-b557-4e3c-a51c-ae37072ced79" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="92f5f3b3-acef-4f72-8d70-176638aa88b0" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="19b66a74-6b0c-4f04-a181-4c231b795ac2" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="ab39efdc-0956-492e-b6a9-cc91f11ee51e" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="bc2e53aa-bc00-4710-b6e3-fd87ac94051f" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="acb798e1-7fed-4601-85cf-478418aa43e4" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="742183a4-391a-4eae-a4ec-a39c01cb816e" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="d10708ee-fef7-4522-9cf9-816032c40e27" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="b77f9d4c-5f35-4f81-a987-dbfb33fa9141" class="GINGER_SOFTWARE_mark">.</span></span></span>port)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="8ce0823d-3b6d-4f16-8666-6caac779f3a8" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="d6b01d2a-92d9-4090-ba9f-fdc43390e8c3" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="af31ac03-0809-4bda-8be1-1804f4797a88" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="5c028069-f239-4a89-ba0f-dcfcf46f391a" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="367d8e80-feb9-4d6f-8786-670bd2c1fff7" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="4b4584ff-9603-4c15-b50a-9a7b21ccc80e" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="b2d34ae1-978e-4f67-a396-b9c0e704044b" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="b350f8f6-f448-4af3-b2db-36a183ba2db2" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="178a435b-fb85-4382-be40-ce970fb2655b" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="0e6e061d-0d2a-4abe-b8de-9f73ea19ff5e" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="9fa1d1f0-7063-4324-a577-882876983513" class="GINGER_SOFTWARE_mark">.</span></span></span>port)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="4df47b49-d669-4718-8575-c0f3cc3f7afb" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 1 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="766fbbce-e3e1-4d73-8001-7ccdcbeaefb4" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="8c7dc8f3-fa71-464a-8375-961f9b3114c3" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="26448288-2e3b-4ec6-939b-59d75ee67b10" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="f37b4843-54a3-483c-9f98-ba5bbb9ff8ea" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="393db303-1aa5-4e56-afdf-ced88c7d256a" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">4) No implementation for <span>
<span><span id="af37e1b5-9916-444c-afb4-e04f03fefeef" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="fad8d149-458e-4fc6-9c52-99dd4aa9e7ad" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="e8e86e8d-c726-439e-a77c-9ea3938e796c" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="99a49a65-9406-4e61-832d-7d27a2c71988" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="d8e42973-0717-449b-9004-81fee8305bde" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="780438e4-3807-44dc-8330-993cca9bb66d" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="afe41523-4012-475f-b50d-f645e0d68ff4" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="25f10115-077f-4199-81a3-6b41558bbaf6" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="70aa2d96-2c75-46ca-a98c-6752999f1c1b" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="00295208-ca02-4213-b1f2-a83f1edad802" class="GINGER_SOFTWARE_mark">(</span></span></span>value=thrift<span><span><span id="96d22fe8-6004-4b24-a0a2-d0e2e9a744d1" class="GINGER_SOFTWARE_mark">.</span></span></span>operation<span><span><span id="00859029-a2a9-4898-bd62-60d94b90e7b3" class="GINGER_SOFTWARE_mark">.</span></span></span>timeout)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="079c60b8-b3a5-4d5a-88e8-9ce63c55f56a" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="e01c2af1-649e-4320-99a6-0029e9138cc0" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="e71676d3-3ddb-46ef-b637-6f8777440bb0" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="7c32b413-2f85-4ff9-ae87-11e675d0ac7b" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="338ae23b-5cc4-486c-93fa-544966a85b6a" class="GINGER_SOFTWARE_mark">.</span></span></span>Integer
annotated with @com<span><span><span id="167193e5-5ace-48b9-897a-14a748cd5e51" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="0b862601-7974-43b3-aa35-4dcd2abea5ca" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="615663cf-1e58-4fc5-805d-7c793fd4a158" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="80024d8b-e260-4946-a679-24d122ba1439" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="c43b1366-9e67-4d6a-b7b2-75dfeb186161" class="GINGER_SOFTWARE_mark">(</span></span></span>value=thrift<span><span><span id="6ca3f23c-bc55-40f0-8ab9-88a82024c311" class="GINGER_SOFTWARE_mark">.</span></span></span>operation<span><span><span id="e0e05a27-e0c5-4037-9c8f-668ff0f563f9" class="GINGER_SOFTWARE_mark">.</span></span></span>timeout)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="cf5e3fae-4f33-45f1-a714-4be9613513e3" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 6 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="49a2ec54-119b-4c39-a438-bcefa0b29630" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="41019d5a-ed93-4e5d-9045-5f50af02cde3" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="e06facbb-671d-4617-9f45-c96194c87369" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="d2fba770-1fff-41fd-b1af-b1439e869274" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="1924cc8c-d900-4428-bbc0-b0ae7a3acae6" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">5) No implementation for <span>
<span><span id="b2cfd7cd-8031-4571-a11d-c66b2ee74d6b" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="83f69302-0738-474f-b210-d0b5420feaa0" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="92787b8a-1ccb-4626-bb99-fb6d005d371d" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="9fed1d0d-5829-4f02-af9f-8751d8ad29f9" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="360d9e99-2a79-4aa3-81ad-618dcd1b9e23" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="4802f37f-0a8d-42fb-87ea-55cabad5c934" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="724a3591-ec49-4e3a-a05b-de9ff30a758e" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="6b0ad624-253e-46b5-b8ec-afb9b097560a" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="8692bacf-16bd-438d-a56c-b34adb6b625a" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="e4e79375-eb23-410f-afba-0cbe7e810916" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="32ed11ac-66ed-4c36-b104-3f16dfd2f5fa" class="GINGER_SOFTWARE_mark">.</span></span></span>hosts)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="68aaeec0-d67a-42c3-abb8-5d973f7d6585" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="a7819516-85ad-4cf6-a801-a3b661861e47" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="69d64bbc-8947-4c83-8df1-9d052d4678f7" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="4518ed08-091a-4c20-9e0c-8c2c04127596" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="554d8bc6-036d-4a50-852d-abbe203e3854" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="fa3cfcee-68c8-4684-826f-4d674e2c08f4" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="fd356897-6bec-49a9-80e3-906315c9b588" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="d0b3f1bb-adb1-425f-81eb-8e6769b1226c" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="ad21841a-ee8f-4409-a418-95a7bd49b9a8" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="92685f5d-2e62-4f41-96f8-a11082844fd3" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="de779ef7-3a40-4140-b4bb-48b32b1910b4" class="GINGER_SOFTWARE_mark">.</span></span></span>hosts)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="bf54bbf0-5b36-4be5-9dba-6a0338970128" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 0 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="2e1206b5-0718-45bd-bf8c-d20e23fba2f5" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="285bce80-37a3-456c-8119-7fb14335e355" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="1f297de2-4880-401b-b81c-76e23c43a159" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="ff36140d-e75c-469c-8c8b-feed0a93ea58" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="fe8f4d18-7b16-4fce-8c2d-ecac3b862d3d" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">6) No implementation for <span>
<span><span id="b5ea64c0-30c8-420a-ac62-d0a401691316" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="a2ed9fd6-c5d6-47dd-8558-758f1ace5472" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="d4853ae5-7c5d-4218-9956-34b375ecb7d3" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="f63dccd5-f4c6-4e00-85f9-2327c5a74426" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="4a457f27-6ff6-4c4d-9881-8b7c9321e99b" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="54d4aedd-6471-486f-895f-ef748140001c" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="ba162b68-fc03-4845-9897-2cd2df2160f1" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="9712bd7d-96a4-4b6c-b191-3a614bae4daf" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="84b20c29-19eb-42d5-a764-41250fbd9e85" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="00e4f6f5-30bc-4a92-b636-d037221848ff" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="52f7503e-1212-4e9b-b8c8-f6e06fc33923" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="38092b2c-6958-45f4-a523-0e494de78c15" class="GINGER_SOFTWARE_mark">keyspace</span></span></span>)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="c51b184f-a905-4ae8-822a-ef7c44149ef5" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="89a201ff-de4c-4782-81c0-7a73f2203539" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="609e977d-c1ff-457b-9eb3-1da202791069" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="4ac91e78-508e-401b-bbc2-9cca682928d0" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="66d5252f-fefa-409b-98ad-6851a713068d" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="ca5161ae-81dc-477b-9063-619332db6515" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="3d9ae049-ec14-40a6-85e5-50eb7f7e7123" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="c736de72-4bb6-4603-bd34-dca42368bec3" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="0f685e74-ebf5-46c4-b70b-3e20c18f1fed" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="1af77135-a7c2-46ef-9287-d45a336c106f" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="e95cff5b-c1e9-4527-ac4c-dd97e28c1e6e" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="3f6fad1b-0fc6-4e9d-a4e5-83cd31c1c40a" class="GINGER_SOFTWARE_mark">keyspace</span></span></span>)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="d9384e4b-3bd1-4d99-8e81-1ea10a94f875" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 3 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="494a3d91-ce42-48e8-b9ac-862269f42d7a" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="1beb0f44-5d75-4e7e-9b9e-63317cb91653" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="1c129f7b-cdc1-489d-821f-87aab05b4394" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="b0d61cdd-85c2-4a54-962b-717c028088e9" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="5bbac9b4-e62a-4fdc-a97b-6bef664b396e" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">7) No implementation for <span>
<span><span id="76697dac-222a-4ab8-b003-e00df5c86904" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="eefa0057-21c4-45f6-a5a5-61eacd2b87bc" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="83968302-9d07-494b-98e8-4e23c7cedb89" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="963e027f-9bef-487c-88a6-741b4fe5626d" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="633d7bc7-a301-42d0-b24d-981aff2874f8" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="07928c30-0305-493b-b5ec-0886506889c6" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="5dc4d8b8-62e6-45f7-a402-0e526ef26253" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="97dbb540-fdc7-48a1-b427-55a75d6768ed" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="79848b0d-2af9-469f-93ab-67a6fa05f565" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="24270902-6314-422d-9fb6-564e123c0e49" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="5a79253f-087a-42c6-a0fa-c5d117d2a8ec" class="GINGER_SOFTWARE_mark">.</span></span></span>pool)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="7499c4c9-0f42-42d5-a9bc-86601b15045d" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="2a252b79-61ac-4bb1-9b12-83e54264c1e1" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="5fdc0d86-effe-4846-bca6-49a8ce21073f" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="241a99b9-0317-49ad-88dd-28e65538fd96" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="983477a2-8d96-4715-8425-62eedcebd3dd" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="e79beaae-5250-4a24-9897-058ba137a6a5" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="f2edd834-ee6e-41d6-ac08-24ee3aecf067" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="d079bf1c-2791-46df-b46e-19fb8b084576" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="205a41f3-e6bc-49e5-a9eb-6693ebecdf15" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="34ec2c23-77af-4ebd-849f-73e729b028d4" class="GINGER_SOFTWARE_mark">(</span></span></span>value=cassandra<span><span><span id="4a8153b3-292d-4340-bb8a-58b43c9b4b2c" class="GINGER_SOFTWARE_mark">.</span></span></span>pool)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="0ae03c50-70c3-4cf6-b54e-92c0b4db7560" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 2 at au.org.ala.biocache.persistence.CassandraPersistenceManager.<<span><span><span id="453bd643-b1ff-43cf-a135-b2c0c1ddaf64" class="GINGER_SOFTWARE_mark">init</span></span></span>>(CassandraPersistenceManager<span><span><span id="ff352b5d-8668-4fdc-8ddf-91baa1b85d2b" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="3cc5735e-6c9d-4b8c-b85c-6f717d95a81c" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="b5603856-f4d9-41a2-8e45-1f2b4cf85d90" class="GINGER_SOFTWARE_mark">:</span></span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="078bb120-339d-42b1-a965-ddc42ace7ab6" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:184)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">8) No implementation for <span>
<span><span id="34a3aa04-fbe9-4202-9bf8-c908750debed" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="a7cce3b4-3fc3-46ec-b2bc-c08824f4c892" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="f52fe583-c63e-4881-91a0-f2fca8f50f29" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="c8ca6d21-3976-4c41-a4f7-24e705cb0fde" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="44bf7ec9-ec12-48d9-bcb9-52f87ea7faa7" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="df76430f-5791-4a95-8e61-a0c5a58f008f" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="6de226c0-a1a7-4b05-8061-269ba9e3d2cc" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="731cceb0-3a97-4310-a53f-41126b222535" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="f57b64f5-68f6-43c8-830b-8793ca3b89d1" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="cbc7115d-36eb-4328-a95d-db2fb04b6b01" class="GINGER_SOFTWARE_mark">(</span></span></span>value=exclude<span><span><span id="52eaddbb-fa01-4195-8aa2-bc3508fe69ba" class="GINGER_SOFTWARE_mark">.</span></span></span>sensitive<span><span><span id="c3471f90-15fd-4c2c-be0b-92f29247d667" class="GINGER_SOFTWARE_mark">.</span></span></span>values)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="11b3bb89-5ba2-4b11-9338-053200409383" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="758e8e24-bba7-47e1-8fa1-107a6da3261c" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="d1c82d5e-d88c-41d3-b8bc-e5fc48f5635e" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="c49e54e3-807f-422d-888a-c1a404b7af10" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="b819b7cb-7754-4a85-bfb8-a6856dfd2932" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="4babef3d-c6a1-406e-a48b-895fdbaf6b29" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="6137c6b3-fd58-47ed-a48d-66950f1c753d" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="1093d573-4a66-4851-a3ee-650bddfe1971" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="5de7be0c-8c24-427c-88c6-b65911a406d2" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="f6997cfd-4180-4961-a340-f2ce09674a73" class="GINGER_SOFTWARE_mark">(</span></span></span>value=exclude<span><span><span id="4b229b1c-6048-490d-83a3-c17d71b3f988" class="GINGER_SOFTWARE_mark">.</span></span></span>sensitive<span><span><span id="ccb2de20-1547-4f6f-a2f0-aef613af9b18" class="GINGER_SOFTWARE_mark">.</span></span></span>values)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="97d98459-0127-4668-a78c-86a38cb9d77a" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 1 at au.org.ala.biocache.index.SolrIndexDAO.<<span><span><span id="4856153d-2ed7-476e-8384-bce4dcfe399b" class="GINGER_SOFTWARE_mark">init</span></span></span>>(SolrIndexDAO<span><span><span id="fbae7caa-3872-4464-9869-547563af2aad" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="26c871a2-112e-4461-ba0a-52ef88ad3b2a" class="GINGER_SOFTWARE_mark">scala</span></span></span><span><span><span id="2fcf1190-754d-4dac-a700-2be056406e2b" class="GINGER_SOFTWARE_mark">:</span></span></span>28)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="48d855b7-b58a-42b1-a4e6-e7e77db02f60" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:164)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">9) No implementation for <span>
<span id="a8332f1e-6685-4e13-a263-687641bee136" class="GINGER_SOFTWARE_mark">java</span></span><span><span id="542a1bf1-9e45-42e5-9dcc-ff59d70f4082" class="GINGER_SOFTWARE_mark">.</span></span><span><span id="625c0a43-7bb4-4e8e-ab83-794561dfa503" class="GINGER_SOFTWARE_mark">lang</span></span><span><span id="4efb2191-d571-44b8-8b49-de8a6e9d0081" class="GINGER_SOFTWARE_mark">.</span></span>String
annotated with @com<span><span id="331199cf-3c47-48bf-a699-7e77ea92eb87" class="GINGER_SOFTWARE_mark">.</span></span>google<span><span id="06e48003-c625-45c7-85de-9eed63688fb5" class="GINGER_SOFTWARE_mark">.</span></span><span><span id="8692939f-c76e-4419-b99e-1ee67d491e0d" class="GINGER_SOFTWARE_mark">inject</span></span><span><span id="b0e01f36-687f-4fca-b882-3edf88de6b71" class="GINGER_SOFTWARE_mark">.</span></span>name<span><span id="6d58f4d5-9d5d-47d5-8177-6e97cd5d0a4e" class="GINGER_SOFTWARE_mark">.</span></span>Named<span><span id="f5c780f4-874d-4e2f-82cd-111fcc57d243" class="GINGER_SOFTWARE_mark">(</span></span>value=extra<span><span id="c8e0d792-5eaf-4a2d-b4f0-50b5cdfabd06" class="GINGER_SOFTWARE_mark">.</span></span><span><span id="f5cb0695-12aa-4730-ad6e-ffd4c0b2545a" class="GINGER_SOFTWARE_mark">misc</span></span><span><span id="ef0693cf-eae0-4554-97fa-336df1ac06a7" class="GINGER_SOFTWARE_mark">.</span></span>fields)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="7eacab40-fa4a-4779-b6f9-d0ad3d87ae8d" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="144b2230-f59d-4a8d-8233-6fb63ba095e6" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="041db8a9-50f3-4172-b2b7-f882cbcc92a1" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="911a9169-a207-47fe-821b-73eff5d5a4d2" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="dca675dc-6bbf-4127-8a9e-47370eafe482" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="d34e1433-7fba-4396-b978-437af628bd91" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="a8e85ae9-8cd0-43e9-bea0-163082adc4ba" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="6ecb6abd-3bec-446e-94bd-c07aaf3e4fa4" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="7e3a8110-9d3b-40e8-9641-95071a5551b2" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="61817488-c290-4c01-9f5e-4b86a5b2bd8d" class="GINGER_SOFTWARE_mark">(</span></span></span>value=extra<span><span><span id="bc744a90-004b-4197-9091-8019753ff213" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="6cf709c8-0c59-4727-95cb-cd2a4c6eea2c" class="GINGER_SOFTWARE_mark">misc</span></span></span><span><span><span id="1c31c04a-5c2d-4728-9fa7-71789742c41e" class="GINGER_SOFTWARE_mark">.</span></span></span>fields)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="89f58b60-b538-4612-b7e9-87d74a96c9d8" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 2 at au.org.ala.biocache.index.SolrIndexDAO.<<span><span id="9afdc8a6-20d0-44a7-9365-c3d9c525fc67" class="GINGER_SOFTWARE_mark">init</span></span>>(SolrIndexDAO<span><span id="9a7dbcb3-39bc-42e4-b630-ff38ff1a577a" class="GINGER_SOFTWARE_mark">.</span></span><span><span id="e0a639ad-9e8a-499b-87cc-a18276b4295b" class="GINGER_SOFTWARE_mark">scala</span></span><span><span id="5f51270c-2339-44b3-ba0b-d602a241a00b" class="GINGER_SOFTWARE_mark">:</span></span>28)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="842abcb8-b311-4b4a-b315-f38f3015a7b2" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:164)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">10) No implementation for <span>
<span><span id="697cd76d-f490-4b7e-a7b4-fcbfe7b5e929" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="7a6a2600-3446-4554-83de-36b132c06abb" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="c22aeb8b-b895-47a6-a5af-53e318d71b7a" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="766dcf2b-af2e-43a9-aa7d-4a4e0872e7b6" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="74be8783-37a4-4aaa-bb11-5a5a08064c88" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="0ec341fe-01d5-4ca5-880c-0436e42f285d" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="eeb4711c-4353-4bd5-a780-c4dce863a322" class="GINGER_SOFTWARE_mark">inject</span></span></span><span><span><span id="b219f18c-6c8a-4994-ae53-4d54eefaa4af" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="b34e6d62-a760-439f-b0f1-c0c60a0c06cc" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="400ea7be-9d8a-4128-8c35-0d3ef8107e75" class="GINGER_SOFTWARE_mark">(</span></span></span>value=solr<span><span><span id="9d41725b-9076-4ab9-aa26-6671a033d460" class="GINGER_SOFTWARE_mark">.</span></span></span>home)
was bound.</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="d4ec50e5-2354-4f19-840a-9d6854298c4e" class="GINGER_SOFTWARE_mark">while</span></span></span> locating
<span><span><span id="24b92da0-04dc-4dfe-a860-d0d4bbfb50f2" class="GINGER_SOFTWARE_mark">java</span></span></span><span><span><span id="cbce41fa-af1d-4a74-aa27-0c68caf91385" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="25e95bb9-3a02-4997-9531-a3959eccafd4" class="GINGER_SOFTWARE_mark">lang</span></span></span><span><span><span id="1c33a731-72de-41be-9bf5-882b0cc77893" class="GINGER_SOFTWARE_mark">.</span></span></span>String
annotated with @com<span><span><span id="a4e2c702-ae85-42e8-b77a-1ca2d4009729" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="376c468e-555c-4e48-9274-3fbbb9e1c798" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="90da5bb2-8599-4424-8741-86558b3fb1bc" class="GINGER_SOFTWARE_mark">.</span></span></span>name<span><span><span id="21703f2d-d7ff-495f-87a4-e7c98f48f48f" class="GINGER_SOFTWARE_mark">.</span></span></span>Named<span><span><span id="a8cd3ee5-3c55-493d-a631-6ff4ebb728b5" class="GINGER_SOFTWARE_mark">(</span></span></span>value=solr<span><span><span id="120d450b-b2ee-4db1-93ce-f166042bdc78" class="GINGER_SOFTWARE_mark">.</span></span></span>home)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="a4e7533b-632a-46ae-87da-4b7b6c964e6f" class="GINGER_SOFTWARE_mark">for</span></span></span> parameter 0 at au.org.ala.biocache.index.SolrIndexDAO.<<span><span id="be92b333-5cc6-43df-ac24-1bef79f5582c" class="GINGER_SOFTWARE_mark">init</span></span>>(SolrIndexDAO<span><span id="c7cce591-bdaf-4af7-af94-964e14d7451b" class="GINGER_SOFTWARE_mark">.</span></span><span><span id="2b331141-86e2-4d90-82b8-2b4c70b13530" class="GINGER_SOFTWARE_mark">scala</span></span><span><span id="ac86988e-9c14-4e48-9ec3-6b130cd12f91" class="GINGER_SOFTWARE_mark">:</span></span>28)</font></div>
<div><font size="1" face="courier new, monospace"> <span><span><span id="da6cc21d-5083-4100-b198-c688f3b660bc" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.ConfigModule.configure(Config.scala:164)</font></div>
<div><font size="1" face="courier new, monospace"><br>
</font></div>
<div><font size="1" face="courier new, monospace">10 errors</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="aa8b1c9f-6c7e-4401-8e4d-a2069c7ccc61" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="8b82f3be-c22e-4857-b9af-1f2ce325b7f5" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="0ab7ca75-8e24-4e09-b387-14b6aa7fba41" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="e0970c53-7dba-47c0-bd4c-4f01a849085b" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="98d3e30d-f1e6-49eb-98b4-8781a51d1cd4" class="GINGER_SOFTWARE_mark">.</span></span></span>internal<span><span><span id="92115acf-92f3-442b-93b5-f5896f3bd55b" class="GINGER_SOFTWARE_mark">.</span></span></span>Errors<span><span><span id="cf2584e6-34b0-4019-9802-b2441c675ffa" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="e1dc6f4b-d528-4191-a3d9-e29d45f88be9" class="GINGER_SOFTWARE_mark">throwCreationExceptionIfErrorsExist</span></span></span><span><span><span id="9bc96a37-ddb1-4437-be31-5b2eac449024" class="GINGER_SOFTWARE_mark">(</span></span></span>Errors.java<span><span><span id="5ff37ffd-dd1b-45f4-ad34-8ad048e162c0" class="GINGER_SOFTWARE_mark">:</span></span></span>354)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="58eac8e9-bc65-4860-a9b3-f3ad4d02e6ae" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="1783c82e-c6da-4d33-b94b-6498a2fcbe2a" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="db274627-5f31-4e22-a714-5cf47c2fcfd0" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="09e52c55-c8a8-4a9f-99ba-98004503911b" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="e765e32b-ae88-40f8-87bb-18fecbefc378" class="GINGER_SOFTWARE_mark">.</span></span></span>InjectorBuilder<span><span><span id="3de3806c-47ab-4a3c-b889-379b36538a8d" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="52d48939-08b3-4093-ad3a-7c4f2f27b2d8" class="GINGER_SOFTWARE_mark">initializeStatically</span></span></span><span><span><span id="4de19965-988a-42a6-abc2-ff4a9aff3860" class="GINGER_SOFTWARE_mark">(</span></span></span>InjectorBuilder.java<span><span><span id="97c968b3-89da-4dbc-8e3c-711729e5dd60" class="GINGER_SOFTWARE_mark">:</span></span></span>152)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="4ec3830a-70e3-4db5-b36b-c24e5b855389" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="180feb66-3a62-4580-b34b-11abc28da025" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="48692e40-06d2-4e56-ae7d-04862a335b87" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="83f5ee71-42e4-4c1c-a4a2-466aaebbfaad" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="92124931-f392-4fb2-abfb-01c17c4d0926" class="GINGER_SOFTWARE_mark">.</span></span></span>InjectorBuilder<span><span><span id="5d188cc5-5cb2-4916-a640-52d6ac135de7" class="GINGER_SOFTWARE_mark">.</span></span></span>build<span><span><span id="bb8fbdad-e343-4d92-a080-96ab317b31d1" class="GINGER_SOFTWARE_mark">(</span></span></span>InjectorBuilder.java<span><span><span id="6ebeb4aa-f75e-4e55-9a5c-f32dc66187de" class="GINGER_SOFTWARE_mark">:</span></span></span>105)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="a38e4bb3-75de-46d7-b8d5-6fdcb52e9c77" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="286b34e6-c8f0-4b8e-a09a-4db4c0edeb1a" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="978f467c-2bad-4ba3-903a-ab8fdacd9c65" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="7204fe06-36d1-4cf2-bb34-0e1a3afce41f" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="33e908ca-4bb7-47de-8881-40bb08a7ddc6" class="GINGER_SOFTWARE_mark">.</span></span></span>Guice<span><span><span id="9b609a6d-bc16-48a7-8ed2-9c6ec8e9b078" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="74678485-b00d-46d9-9124-4081f7d0f0e4" class="GINGER_SOFTWARE_mark">createInjector</span></span></span><span><span><span id="dd885d9b-164c-4cce-b610-bdf01e093912" class="GINGER_SOFTWARE_mark">(</span></span></span>Guice.java<span><span><span id="2a5bcab1-ddc2-4e22-8920-e3bda4e406a6" class="GINGER_SOFTWARE_mark">:</span></span></span>92)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="77588183-7dba-44b5-9ac8-15fe630804d1" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="bb943003-0643-418c-8c50-5043ade21ad5" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="8c63e013-fa61-4eb4-a37d-1e812dc35a59" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="223ae273-8539-44fe-85f1-ec2ed26b514a" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="d4fe2279-3efb-4b71-b17b-b32afb36f403" class="GINGER_SOFTWARE_mark">.</span></span></span>Guice<span><span><span id="f2bd3fde-7bfe-4a40-a37c-cb4196f356ce" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="c90e4032-683e-4e76-abf4-1639f56d2cbe" class="GINGER_SOFTWARE_mark">createInjector</span></span></span><span><span><span id="dd8bfa58-df54-426c-b652-75904b4ea728" class="GINGER_SOFTWARE_mark">(</span></span></span>Guice.java<span><span><span id="e20b1233-038a-4df7-ba46-50aa03a2d01d" class="GINGER_SOFTWARE_mark">:</span></span></span>69)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="c23b2dab-f4ee-4139-b94f-071a214c14b5" class="GINGER_SOFTWARE_mark">at</span></span></span>
<span><span><span id="82ff58c9-942f-4621-8230-c50bceb6996c" class="GINGER_SOFTWARE_mark">com</span></span></span><span><span><span id="31a4dd60-4321-4a69-bd5a-6d286466ed85" class="GINGER_SOFTWARE_mark">.</span></span></span>google<span><span><span id="273076c5-1c45-4dc1-b366-f42812fd47a1" class="GINGER_SOFTWARE_mark">.</span></span></span>inject<span><span><span id="ac156ba1-8b72-4a2d-8cfd-7ebbd7bf8e9b" class="GINGER_SOFTWARE_mark">.</span></span></span>Guice<span><span><span id="ff15e287-b827-4d69-aabc-ad4ee4317af0" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="9d3aff0b-78d6-4529-81a1-3640004ba55a" class="GINGER_SOFTWARE_mark">createInjector</span></span></span><span><span><span id="d3a5136d-d69c-4d3e-93ff-d13e9b645f9f" class="GINGER_SOFTWARE_mark">(</span></span></span>Guice.java<span><span><span id="e64290d7-3b2c-4e64-83af-286eb3e4b83a" class="GINGER_SOFTWARE_mark">:</span></span></span>59)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="fffe3fb8-5198-449e-98d3-02bce7a30ae3" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.Config$.<<span><span id="b059ab0b-2c4e-49b6-8388-c089cee635c5" class="GINGER_SOFTWARE_mark">init</span></span>>(Config<span><span id="80e182c2-3550-495e-8cf1-ba401a9c7f00" class="GINGER_SOFTWARE_mark">.</span></span><span><span id="5bfb7a1a-3a10-4888-bd3d-59d30c51a274" class="GINGER_SOFTWARE_mark">scala</span></span><span><span id="e6ec1826-7543-443b-b45a-dd8eb482e1d5" class="GINGER_SOFTWARE_mark">:</span></span>24)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span><span><span><span id="2cb01380-6843-4192-9d76-9897f74f140f" class="GINGER_SOFTWARE_mark">at</span></span></span> au.org.ala.biocache.Config$.<<span><span><span id="202447cf-c09d-4888-9115-b2b5cb01ca44" class="GINGER_SOFTWARE_mark">clinit</span></span></span>>(Config<span><span><span id="3d76d1ad-0a9b-4081-9d2b-8fd4fadb56ab" class="GINGER_SOFTWARE_mark">.</span></span></span><span><span><span id="633e2f5e-4620-48b3-b02a-1d74d34f3215" class="GINGER_SOFTWARE_mark">scala</span></span></span>)</font></div>
<div><font size="1" face="courier new, monospace"><span style="white-space:pre-wrap"></span>... 5 more</font></div>
</div>
<div><br>
</div>
<div><br>
</div>
<div>
<div>Related to these specific issues (data update and incremental load), I will need to upgrade the <span id="afbaba48-4365-4b01-83bf-bd03027d439b" class="GINGER_SOFTWARE_mark">biocache</span> version (1.1 or newer) or I could work with the version 1.0-SNAPSHOT?
If I update this version, I will have compatibility with the other components? How should I proceed?<br>
</div>
</div>
<div class="gmail_extra"><br>
Which layer files should I include in my environment to run these tests?</div>
<div class="gmail_extra"><br>
</div>
<div class="gmail_extra">Thanks!</div>
<div class="gmail_extra"><br>
</div>
<div class="gmail_extra">Regards,</div>
<div class="gmail_extra"><br>
</div>
<div class="gmail_extra">
<div style="color:rgb(80,0,80); font-family:arial,sans-serif; font-size:13px">
<div class="gmail_extra" style="color:rgb(136,136,136)">Daniel Lins da Silva</div>
<div class="gmail_extra" style="color:rgb(136,136,136)">(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="color:rgb(136,136,136)">
<div class="gmail_extra"><font color="#000000">Research Center <span id="6ab227af-fc21-4cf6-b7a4-8952f17102fe" class="GINGER_SOFTWARE_mark">on</span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="color:rgb(136,136,136)"><a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="color:rgb(136,136,136)"><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
<div><br>
</div>
</div>
<br>
<div class="gmail_quote">2014-05-09 2:14 GMT-03:00 <span dir="ltr"><<a href="mailto:David.Martin@csiro.au" target="_blank">David.Martin@csiro.au</a></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr">></span><span>:</span><span></span><span></span><span></span><span></span><span></span><span></span><span></span><span></span><span></span><br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div>
<div style="direction:ltr; font-family:Tahoma; color:rgb(0,0,0); font-size:10pt">
Thanks Daniel.
<div><br>
</div>
<div>I've spotted the problem:</div>
<div>
<div><br>
</div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><span>java</span></span><span style="font-family:'Times New Roman'; font-size:16px"> -</span><span style="font-family:'Times New Roman'; font-size:16px"><span>cp</span></span><span style="font-family:'Times New Roman'; font-size:16px"><span> .</span></span><span style="font-family:'Times New Roman'; font-size:16px"><span>:</span></span><span style="font-family:'Times New Roman'; font-size:16px"><span>biocache</span></span><span style="font-family:'Times New Roman'; font-size:16px"><span>.</span></span><span style="font-family:'Times New Roman'; font-size:16px">jar
au.org.ala.util.DwcCSVLoader dr0 -l dataset-updated</span><span style="font-family:'Times New Roman'; font-size:16px"><span>.</span></span><span style="font-family:'Times New Roman'; font-size:16px"><span>csv</span></span><span style="font-family:'Times New Roman'; font-size:16px"> -</span><span style="font-family:'Times New Roman'; font-size:16px"><span>b</span></span><span style="font-family:'Times New Roman'; font-size:16px"> true</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
</div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><span>this</span> bypasses lookups against the
<span>collectory</span> for the metadata. </span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px">To load this dataset, you can use the
<span>biocache</span> <span>commandline</span> tool like so:</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
<div>
<p></p>
<p>$ <span>java</span> -<span>cp</span> /usr/lib/<span>biocache</span><span>:</span>/usr/lib/<span>biocache</span>/<span>biocache</span>-store-1.1-assembly<span>.</span>jar -Xms2g -Xmx2g au.org.ala.biocache.cmd.CommandLineTool</p>
<p><br>
</p>
<p>----------------------------</p>
<p>| <span>Biocache</span> management tool |</p>
<p>----------------------------</p>
<p><span style="font-size:10pt">Please supply a command or hit ENTER to view command list.</span><span style="font-size:10pt"> </span></p>
<p><span>biocache</span>> ingest dr8</p>
</div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px">This will:</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px">1) Retrieve the metadata from the configured instance of the
<span>collectory</span></span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px">2) Load, process, sample (if there are layers configured and available) and index</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px">Cheers</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px"><br>
</span></div>
<div><span style="font-family:'Times New Roman'; font-size:16px">Dave</span></div>
<div><br>
</div>
<div>
<div>
<div style="font-family:'Times New Roman'; color:rgb(0,0,0); font-size:16px">
<hr>
<div style="direction:ltr"><font face="Tahoma" color="#000000"><b>From:</b> Daniel Lins [<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>]<br>
<b>Sent:</b> 09 May 2014 14:27
<div>
<div><br>
<b>To:</b> Martin, Dave (CES, Black Mountain)<br>
<b>Cc:</b> <a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a>; dos Remedios, Nick (CES, Black Mountain); Pedro Corręa; Nicholls, Miles (CES, Black Mountain)<br>
<b>Subject:</b> Re: [Ala-portal] DwC-A loading <span>problems</span><br>
</div>
</div>
</font><br>
</div>
<div>
<div>
<div></div>
<div>
<div dir="ltr">David,
<div><br>
</div>
<div>The dr0 configuration:</div>
<div><br>
</div>
<div><a href="https://www.dropbox.com/s/lsy11jadwmyghjj/collectoryConfig1.png" target="_blank">https://www.dropbox.com/s/lsy11jadwmyghjj/collectoryConfig1.png</a><br>
</div>
<div><br>
</div>
<div>Sorry, but this server doesn't have external access yet.</div>
<div><br>
</div>
<div><br>
</div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">2014-05-09 1:06 GMT-03:00 <span dir="ltr"><<a href="mailto:David.Martin@csiro.au" target="_blank">David.Martin@csiro.au</a></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr">></span><span>:</span><br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div>
<div style="direction:ltr; font-family:Tahoma; color:rgb(0,0,0); font-size:10pt">
As an example of what it should look like, see:<br>
<br>
<a href="http://ala-demo.gbif.org/collectory/dataResource/edit/dr8?page=contribution" target="_blank">http://ala-demo.gbif.org/collectory/dataResource/edit/dr8?page=contribution</a><br>
<div><br>
</div>
<div><br>
<div>
<div style="font-family:'Times New Roman'; color:rgb(0,0,0); font-size:16px">
<hr>
<div style="direction:ltr"><font face="Tahoma" color="#000000"><b>From:</b> Daniel Lins [<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>]
<div><br>
<b>Sent:</b> 09 May 2014 13:59<br>
<b>To:</b> Martin, Dave (CES, Black Mountain)<br>
<b>Cc:</b> <a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a>; dos Remedios, Nick (CES, Black Mountain); Pedro Corręa; Nicholls, Miles (CES, Black Mountain)<br>
</div>
<div>
<div><b>Subject:</b> Re: [Ala-portal] DwC-A loading <span>problems</span><br>
</div>
</div>
</font><br>
</div>
<div>
<div>
<div></div>
<div>
<div dir="ltr">Thanks David,
<div><br>
</div>
<div>We use the DwC term "<span><span>occurrenceID</span></span>" to identify the records. It's a unique key.</div>
<div><br>
</div>
<div>
<div>However, when I reload a dataset to update some DwC terms of the records, the system duplicates this data (keeps the old record and creates another with changes). <br>
</div>
</div>
<div><br>
</div>
<div>For instance (update of locality).</div>
<div><br>
</div>
<div>Load 1 ($ <span><span><span>java</span></span></span> -<span><span><span>cp</span></span></span><span><span><span> .</span></span></span><span><span><span>:</span></span></span><span><span><span>biocache</span></span></span><span><span><span>.</span></span></span>jar
au.org.ala.util.DwcCSVLoader dr0 -l dataset.csv -<span><span><span>b</span></span></span> true)</div>
<div><br>
</div>
<div><font color="#38761d">{<span><span><span>OccurrenceID</span></span></span>: 1, municipality: Sao Paulo,<span><span><span> ...</span></span></span>},</font></div>
<div><font color="#3d85c6">{<span><span><span>OccurrenceID</span></span></span>: 2, municipality: Sao Paulo,<span><span><span> ...</span></span></span>}</font></div>
<div><br>
</div>
<div>Process 1 (biocache$ process dr0)</div>
<div>Index 1 (biocache$ index dr0)</div>
<div><br>
</div>
<div>Load 2 (updated records and new records) (($ <span><span><span>java</span></span></span> -<span><span><span>cp</span></span></span><span><span><span> .</span></span></span><span><span><span>:</span></span></span><span><span><span>biocache</span></span></span><span><span><span>.</span></span></span>jar
au.org.ala.util.DwcCSVLoader dr0 -l dataset-updated<span><span><span>.</span></span></span><span><span><span>csv</span></span></span> -<span><span><span>b</span></span></span> true)</div>
<div>
<div><br>
</div>
<div><font color="#38761d">{<span><span><span>OccurrenceID</span></span></span>: 1, </font><span style="color:rgb(56,118,29)">municipality</span><font color="#38761d">: Rio
<span>de</span> Janeiro,<span><span><span> ...</span></span></span>},</font></div>
<div><font color="#3d85c6">{<span><span><span>OccurrenceID</span></span></span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: Rio
<span>de</span> Janeiro,<span><span><span> ...</span></span></span>},</font></div>
</div>
<div>{<span><span><span>OccurrenceID</span></span></span>: 3, municipality: Sao Paulo,<span><span><span> ...</span></span></span>}<br>
</div>
<div><br>
</div>
<div>
<div>Process 2 (biocache$ process dr0)</div>
<div>Index 2 (biocache$ index dr0)</div>
</div>
<div><br>
</div>
<div>Results shown by ALA:</div>
<div><br>
</div>
<div>
<div><font color="#38761d">{<span><span><span>OccurrenceID</span></span></span>: 1, </font><span style="color:rgb(56,118,29)">municipality</span><font color="#38761d">: </font><span style="color:rgb(56,118,29)">Sao Paulo</span><font color="#38761d">,<span><span><span> ...</span></span></span>},</font></div>
<div><font color="#3d85c6">{<span><span>OccurrenceID</span></span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: </font><span style="color:rgb(61,133,198)">Sao Paulo</span><font color="#3d85c6">,<span><span> ...</span></span>},</font></div>
</div>
<div>
<div>
<div><font color="#38761d">{<span><span>OccurrenceID</span></span>: 1, </font><span style="color:rgb(56,118,29)">municipality</span><font color="#38761d">: </font><span style="color:rgb(56,118,29)">Rio
<span>de</span> Janeiro</span><font color="#38761d">,<span><span> ...</span></span>},</font></div>
<div><font color="#3d85c6">{<span><span>OccurrenceID</span></span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: </font><span style="color:rgb(61,133,198)">Rio
<span>de</span> Janeiro</span><font color="#3d85c6">,<span><span> ...</span></span>}</font></div>
</div>
</div>
<div>{<span><span><span>OccurrenceID</span></span></span>: 3, municipality: Sao Paulo,<span><span><span> ...</span></span></span>}<br>
</div>
<div><br>
</div>
<div>But I expected:</div>
<div><br>
</div>
<div>
<div><span style="color:rgb(56,118,29)">{<span><span>OccurrenceID</span></span>: 1, </span><span style="color:rgb(56,118,29)">municipality</span><span style="color:rgb(56,118,29)">: </span><span style="color:rgb(56,118,29)">Rio
<span>de</span> Janeiro</span><span style="color:rgb(56,118,29)">,<span><span> ...</span></span>},</span><br>
</div>
<div>
<div><font color="#3d85c6">{<span><span>OccurrenceID</span></span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: </font><span style="color:rgb(61,133,198)">Rio
<span>de</span> Janeiro</span><font color="#3d85c6">,<span><span> ...</span></span>}</font></div>
</div>
<div>{<span><span><span>OccurrenceID</span></span></span>: 3, municipality: Sao Paulo,<span><span><span> ...</span></span></span>}</div>
</div>
<div><br>
</div>
<div>I need to delete (delete-resource function) existing data before the reload? If no, what I did wrong to generate this data duplication?</div>
<div><br>
</div>
<div>Thanks! </div>
<div><br>
</div>
<div><br>
</div>
<div>Regards,</div>
<div><br>
</div>
<div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
Daniel Lins da Silva</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<div class="gmail_extra"><font color="#000000">Research Center <span><span><span>on</span></span></span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
</div>
<div><br>
</div>
<div><br>
</div>
<div> </div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">2014-05-07 0:46 GMT-03:00 <span dir="ltr"><<a href="mailto:David.Martin@csiro.au" target="_blank">David.Martin@csiro.au</a></span><span dir="ltr"></span><span dir="ltr">></span><span>:</span><br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div>
<div style="direction:ltr; font-family:Tahoma; color:rgb(0,0,0); font-size:10pt">
<div>
<div>Thanks Daniel. Natasha has now left the ALA.</div>
<div><br>
</div>
<div>The uniqueness of records is determined by <span>information</span> stored in the
<span>collectory</span>. See screenshot [1].</div>
<div><span style="font-size:10pt">By default, "<span>catalogNumber</span>" is <span>
used but</span> you can change this to any number of fields that should be stable in the data. </span></div>
<div>Using unstable fields for the ID isn't recommended (e.g. <span>scientificName</span>). To update the records, the process is to just re-load the dataset.</div>
<div><br>
</div>
<div>Automatically loaded - this <span>isnt</span> in use and we may remove from the UI in future iterations.</div>
<div>Incremental Load - affects the sample/process/index steps to only run these against the new records. Load is always incremental based on the key field(s) but if the incremental load box isn’t checked it runs the sample/process/index steps against the
whole data set. This can cause a large processing overhead when there’s a minor update to a large data set.</div>
<div><br>
</div>
<div>Cheers</div>
<div><br>
</div>
<div>Dave Martin</div>
</div>
<div>ALA</div>
<div><br>
</div>
<div>[1] <a href="http://bit.ly/1g72HFN" style="font-size:10pt" target="_blank">http://bit.ly/1g72HFN</a></div>
<div><br>
</div>
<div style="font-family:'Times New Roman'; color:rgb(0,0,0); font-size:16px">
<hr>
<div style="direction:ltr"><font face="Tahoma" color="#000000"><b>From:</b> Daniel Lins [<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>]<br>
<b>Sent:</b> 05 May 2014 15:39<br>
<b>To:</b> Quimby, Natasha (CES, Black Mountain)<br>
<b>Cc:</b> <a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a>; dos Remedios, Nick (CES, Black Mountain); Martin, Dave (CES, Black Mountain); Pedro Corręa<br>
<b>Subject:</b> Re: [Ala-portal] DwC-A loading <span><span>problems</span></span><br>
</font><br>
</div>
<div>
<div>
<div></div>
<div>
<div dir="ltr">
<div>
<div>Hi Natasha, </div>
<div><br>
</div>
<div>I managed to import the DwC-A file following the steps reported in the previous email. Thank you!</div>
<div><br>
</div>
<div>However, when I tried to update some metadata of an occurrence record (already stored in the database), the system created a new record with these duplicated information. So I started to have several records with the same
<span><span>occurrenceID</span></span> (I did set in the data resource configuration to use "OcurrenceID" to uniquely identify a record).</div>
<div><br>
</div>
<div>How can I update existing records in the database? For instance, the location's metadata of an occurrence record stored in my database?</div>
<div><br>
</div>
<div>I also would like to better understand the behavior of the properties "Automatically loaded" and "Incremental Load". </div>
</div>
<div><br>
</div>
<div>Thanks!!</div>
<div><br>
</div>
<div>Regards,</div>
<div><br>
</div>
<div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
Daniel Lins da Silva</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<div class="gmail_extra"><font color="#000000">Research Center <span><span><span>on</span></span></span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">2014-04-28 3:52 GMT-03:00 Daniel Lins <span dir="ltr"><<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div dir="ltr">Thanks Natasha!
<div><br>
</div>
<div>I will try your recommendations. Once finished, I will contact you.</div>
<div><br>
</div>
<div>Regards<br>
</div>
<div class="gmail_extra">
<div><br>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
Daniel Lins da Silva</div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<div class="gmail_extra"><font color="#000000">Research Center <span><span><span><span>on</span></span></span></span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<br>
</div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<br>
</div>
<br>
</div>
<div class="gmail_quote">2014-04-28 3:26 GMT-03:00 <span dir="ltr"><<a href="mailto:Natasha.Quimby@csiro.au" target="_blank">Natasha.Quimby@csiro.au</a></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr">></span><span>:</span><span></span><span></span><span></span><span></span>
<div>
<div><br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div style="font-size:14px; font-family:Calibri,sans-serif; word-wrap:break-word">
<div>Hi Daniel,</div>
<div><br>
</div>
<div>When you specify a local DwcA Load the archive needs to be unzipped. Try unzipping <b>2f676abc-4503-489e-8f0c-fcb6e1bc554b<span><span><span>.</span></span></span>zip
</b>and then running the following:</div>
<div>
<div><span><span><span>s<b>udo</b></span><b></b></span><b></b><b></b><b></b></span><b>
<span><span><span>java</span></span></span> -<span><span><span>cp</span></span></span><span><span><span> .</span></span></span>:biocache.jar au.org.ala.util.DwCALoader dr7 -l /data/collectory/upload/1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b</b></div>
<div><b><br>
</b></div>
</div>
<div>If you configure the <span><span><span>collectory</span></span></span> to provide the
<span><span><span>dwca</span></span></span> the <span><span><span>biocache</span></span></span> automatically unzips the archive for you. You would need to configure dr7 with the following connection parameters:</div>
<div><br>
</div>
<div>"<span><span><span>protocol</span></span></span>":"DwCA"</div>
<div>"<span><span><span>termsForUniqueKey</span></span></span>"<span><span><span>:</span></span></span>["<span><span><span>occurrenceID</span></span></span>"],</div>
<div><span>"url":"file:////data/collectory/upload/</span>1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b.zip<span>"</span></div>
<div><b><br>
</b></div>
<div>You could then load the resource by:</div>
<div>
<div><span><span><span>s<b>udo</b></span><b></b></span><b></b><b></b><b></b></span><b>
<span><span><span>java</span></span></span> -<span><span><span>cp</span></span></span><span><span><span> .</span></span></span><span><span><span>:</span></span></span><span><span><span>biocache</span></span></span><span><span><span>.</span></span></span>jar
au.org.ala.util.DwCALoader dr7</b></div>
<div><b><br>
</b></div>
</div>
<div>If you continue to have <span><span><span><span>issues please</span></span></span></span> let us know. </div>
<div><br>
</div>
<div>Hope that this helps.</div>
<div><br>
</div>
<div>Regards</div>
<div>Natasha</div>
<div><br>
</div>
<span>
<div style="border-width:1pt medium medium; border-style:solid none none; padding:3pt 0in 0in; text-align:left; font-size:11pt; font-family:Calibri; border-top-color:rgb(181,196,223)">
<span style="font-weight:bold">From: </span>Daniel Lins <<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>><br>
<span style="font-weight:bold">Date: </span>Monday, 28 April 2014 3:54 PM<br>
<span style="font-weight:bold">To: </span><span><span><span><span>"<a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a>" <<a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a></span><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a></span><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a></span><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a></span><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a><span><span><span><span>>,</span></span></span></span>
"dos Remedios, Nick (CES, Black Mountain)" <<a href="mailto:Nick.Dosremedios@csiro.au" target="_blank">Nick.Dosremedios@csiro.au</a><span><span><span><span>>,</span></span></span></span> "Martin, Dave (CES, Black Mountain)" <<a href="mailto:David.Martin@csiro.au" target="_blank">David.Martin@csiro.au</a>><br>
<span style="font-weight:bold">Subject: </span>[Ala-portal] DwC-A loading <span><span><span><span>problems</span></span></span></span><br>
</div>
<div>
<div>
<div><br>
</div>
<blockquote style="border-left:#b5c4df 5 solid; padding:0 0 0 5; margin:0 0 0 5">
<div>
<div>
<div dir="ltr">Hi Nick and Dave,
<div><br>
</div>
<div>We are having some problems in Biocache during the upload of DwC-A files.</div>
<div><br>
</div>
<div>
<div>As shown below, after run the method "au.org.ala.util.DwCALoader", our system returns the error message
<font color="#ff0000">"Exception in thread "main" org<span><span><span><span>.</span></span></span></span><span><span><span><span>gbif</span></span></span></span><span><span><span><span>.</span></span></span></span><span><span><span><span>dwc</span></span></span></span><span><span><span><span>.</span></span></span></span>text<span><span><span><span>.</span></span></span></span>UnkownDelimitersException:
Unable to detect field delimiter"</font></div>
<div><br>
</div>
<div>I accomplished tests using DwC-A files with tab-delimited text files and comma-delimited text files. In both cases the error generated was the same.</div>
</div>
<div><br>
</div>
<div>What causes these problems? (** CSV Loader works great)<br>
</div>
<div><br>
</div>
<div><b><i><span><span><span><span><span>tab</span></span></span></span></span>-delimited file test</i></b></div>
<div><b><br>
</b></div>
<div>
<div>poliusp@poliusp-VirtualBox:~/dev/biocache$ s<b>udo java -cp .:biocache.jar au.org.ala.util.DwCALoader dr7 -l /data/collectory/upload/1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b.zip</b></div>
<div>2014-04-28 01:44:02,837 INFO<span><span><span><span><span> :</span></span></span></span></span> [<span><span><span><span><span>ConfigModule</span></span></span></span></span>] - Loading configuration from /data/biocache/config/biocache-config.properties</div>
<div>2014-04-28 01:44:03,090 INFO<span><span><span><span><span> :</span></span></span></span></span> [<span><span><span><span><span>ConfigModule</span></span></span></span></span>] - Initialise SOLR</div>
<div>2014-04-28 01:44:03,103 INFO<span><span><span><span><span> :</span></span></span></span></span> [<span><span><span><span><span>ConfigModule</span></span></span></span></span>] -
<span><span><span><span><span>Initialise</span></span></span></span></span> name matching indexes</div>
<div>2014-04-28 01:44:03,605 INFO<span><span><span><span><span> :</span></span></span></span></span> [<span><span><span><span><span>ConfigModule</span></span></span></span></span>] - Initialise persistence manager</div>
<div>2014-04-28 01:44:03,606 INFO<span><span><span><span><span> :</span></span></span></span></span> [<span><span><span><span><span>ConfigModule</span></span></span></span></span>] - Configure complete</div>
<div>Loading archive /data/<span><span><span><span><span>collectory</span></span></span></span></span>/upload/1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b<span><span><span><span><span>.</span></span></span></span></span>zip for resource dr7 with unique
terms List<span><span><span><span><span>(</span></span></span></span></span><span><span><span><span><span>dwc</span></span></span></span></span><span><span><span><span><span>:</span></span></span></span></span><span><span><span><span><span>occurrenceID</span></span></span></span></span>)
stripping spaces false incremental false testing <span><span><span><span><span>false</span></span></span></span></span></div>
<div><b>Exception in thread "main" org<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>gbif</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>dwc</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span>text<span><span><span><span><span>.</span></span></span></span></span>UnkownDelimitersException:
Unable to detect field delimiter</b></div>
<div> <span><span><span><span><span>at</span></span></span></span></span> org<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>gbif</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span>file<span><span><span><span><span>.</span></span></span></span></span>CSVReaderFactory<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>buildArchiveFile</span></span></span></span></span><span><span><span><span><span>(</span></span></span></span></span>CSVReaderFactory.java<span><span><span><span><span>:</span></span></span></span></span>129)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> org<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>gbif</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span>file<span><span><span><span><span>.</span></span></span></span></span>CSVReaderFactory<span><span><span><span><span>.</span></span></span></span></span>build<span><span><span><span><span>(</span></span></span></span></span>CSVReaderFactory.java<span><span><span><span><span>:</span></span></span></span></span>46)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> org<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>gbif</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>dwc</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span>text<span><span><span><span><span>.</span></span></span></span></span>ArchiveFactory<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>readFileHeaders</span></span></span></span></span><span><span><span><span><span>(</span></span></span></span></span>ArchiveFactory.java<span><span><span><span><span>:</span></span></span></span></span>344)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> org<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>gbif</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>dwc</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span>text<span><span><span><span><span>.</span></span></span></span></span>ArchiveFactory<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>openArchive</span></span></span></span></span><span><span><span><span><span>(</span></span></span></span></span>ArchiveFactory.java<span><span><span><span><span>:</span></span></span></span></span>289)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> au.org.ala.util.DwCALoader.loadArchive(DwCALoader.scala:129)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> au.org.ala.util.DwCALoader.loadLocal(DwCALoader.scala:106)</div>
<div> <span><span><span><span>at</span></span></span></span> au.org.ala.util.DwCALoader$.main(DwCALoader.scala:52)</div>
<div> <span><span><span><span>at</span></span></span></span> au.org.ala.util.DwCALoader.main(DwCALoader.scala)</div>
<div><br>
</div>
<div><br>
</div>
<div><b><i><span><span><span><span>comma</span></span></span></span>-delimited file test</i></b><br>
</div>
<div><br>
</div>
<div>
<div>poliusp@poliusp-VirtualBox:~/dev/biocache$ <b>sudo java -cp .:biocache.jar au.org.ala.util.DwCALoader dr7 -l ./<span><span><span><span>dwca</span></span></span></span>-teste3<span><span><span><span>.</span></span></span></span>zip</b></div>
<div>2014-04-28 01:56:04,683 INFO<span><span><span><span> :</span></span></span></span> [<span><span><span><span>ConfigModule</span></span></span></span>] - Loading configuration from /data/biocache/config/biocache-config.properties</div>
<div>2014-04-28 01:56:04,940 INFO<span><span><span><span> :</span></span></span></span> [<span><span><span><span>ConfigModule</span></span></span></span>] - Initialise SOLR</div>
<div>2014-04-28 01:56:04,951 INFO<span><span><span><span> :</span></span></span></span> [<span><span><span><span>ConfigModule</span></span></span></span>] -
<span><span><span><span>Initialise</span></span></span></span> name matching indexes</div>
<div>2014-04-28 01:56:05,437 INFO<span><span><span><span> :</span></span></span></span> [<span><span><span><span>ConfigModule</span></span></span></span>] - Initialise persistence manager</div>
<div>2014-04-28 01:56:05,438 INFO<span><span><span><span> :</span></span></span></span> [<span><span><span><span>ConfigModule</span></span></span></span>] - Configure complete</div>
<div>Loading archive<span><span><span><span> .</span></span></span></span>/<span><span><span><span>dwca</span></span></span></span>-teste3<span><span><span><span>.</span></span></span></span>zip for resource dr7 with unique terms List<span><span><span><span>(</span></span></span></span><span><span><span><span>dwc</span></span></span></span><span><span><span><span>:</span></span></span></span><span><span><span><span>occurrenceID</span></span></span></span>)
stripping spaces false incremental false testing <span><span><span><span>false</span></span></span></span></div>
<div><b>Exception in thread "main" org<span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>gbif</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span><span><span><span><span><span>dwc</span></span></span></span></span><span><span><span><span><span>.</span></span></span></span></span>text<span><span><span><span><span>.</span></span></span></span></span>UnkownDelimitersException:
Unable to detect field delimiter</b></div>
<div> <span><span><span><span>at</span></span></span></span> org<span><span><span><span>.</span></span></span></span><span><span><span><span>gbif</span></span></span></span><span><span><span><span>.</span></span></span></span>file<span><span><span><span>.</span></span></span></span>CSVReaderFactory<span><span><span><span>.</span></span></span></span><span><span><span><span>buildArchiveFile</span></span></span></span><span><span><span><span>(</span></span></span></span>CSVReaderFactory.java<span><span><span><span>:</span></span></span></span>129)</div>
<div> <span><span><span><span>at</span></span></span></span> org<span><span><span><span>.</span></span></span></span><span><span><span><span>gbif</span></span></span></span><span><span><span><span>.</span></span></span></span>file<span><span><span><span>.</span></span></span></span>CSVReaderFactory<span><span><span><span>.</span></span></span></span>build<span><span><span><span>(</span></span></span></span>CSVReaderFactory.java<span><span><span><span>:</span></span></span></span>46)</div>
<div> <span><span><span><span>at</span></span></span></span> org<span><span><span><span>.</span></span></span></span><span><span><span><span>gbif</span></span></span></span><span><span><span><span>.</span></span></span></span><span><span><span><span>dwc</span></span></span></span><span><span><span><span>.</span></span></span></span>text<span><span><span><span>.</span></span></span></span>ArchiveFactory<span><span><span><span>.</span></span></span></span><span><span><span><span>readFileHeaders</span></span></span></span><span><span><span><span>(</span></span></span></span>ArchiveFactory.java<span><span><span><span>:</span></span></span></span>344)</div>
<div> <span><span><span><span>at</span></span></span></span> org<span><span><span><span>.</span></span></span></span><span><span><span><span>gbif</span></span></span></span><span><span><span><span>.</span></span></span></span><span><span><span><span>dwc</span></span></span></span><span><span><span><span>.</span></span></span></span>text<span><span><span><span>.</span></span></span></span>ArchiveFactory<span><span><span><span>.</span></span></span></span><span><span><span><span>openArchive</span></span></span></span><span><span><span><span>(</span></span></span></span>ArchiveFactory.java<span><span><span><span>:</span></span></span></span>289)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> au.org.ala.util.DwCALoader.loadArchive(DwCALoader.scala:129)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> au.org.ala.util.DwCALoader.loadLocal(DwCALoader.scala:106)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> au.org.ala.util.DwCALoader$.main(DwCALoader.scala:52)</div>
<div> <span><span><span><span><span>at</span></span></span></span></span> au.org.ala.util.DwCALoader.main(DwCALoader.scala)</div>
</div>
<div><br>
</div>
<div><br>
</div>
<div>Thanks!</div>
<div><br>
</div>
<div>Regards.</div>
-- <br>
<div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px">Daniel Lins da Silva</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px">(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="font-family:arial,sans-serif; font-size:13px">
<div class="gmail_extra"><font color="#000000">Research Center <span><span><span><span>on</span></span></span></span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px"><a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px"><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
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<span><font color="#888888"><br>
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-- <br>
<div>Daniel Lins da Silva<br>
(<span><span>Cel</span></span>) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
</div>
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<div><br>
</div>
-- <br>
<div>Daniel Lins da Silva<br>
(<span><span>Cel</span></span>) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
</div>
</div>
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</div>
</div>
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</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div>Daniel Lins da Silva<br>
(<span>Cel</span>) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div>Daniel Lins da Silva<br>
(<span>Cel</span>) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
</div>
</div>
</div>
</div>
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</div>
</div>
</div>
</div>
</div>
</blockquote>
</div>
<br>
<br clear="all">
<div><br>
</div>
-- <br>
<div>Daniel Lins da Silva<br>
(Cel) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
</div>
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