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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Thanks Daniel.
<div><br>
</div>
<div>The unique key is specified in the collectory. </div>
<div><span style="font-size: 10pt;">For the dr0 resource, what are the settings in your instance of the collectory ?</span></div>
<div><span style="font-size: 10pt;">If its possible, please send through a URL to your collectory instance.</span></div>
<div><br>
</div>
<div>Cheers</div>
<div><br>
</div>
<div>Dave</div>
<div><br>
<div style="font-family: Times New Roman; color: #000000; font-size: 16px">
<hr tabindex="-1">
<div id="divRpF348296" style="direction: ltr;"><font face="Tahoma" size="2" color="#000000"><b>From:</b> Daniel Lins [daniel.lins@gmail.com]<br>
<b>Sent:</b> 09 May 2014 13:59<br>
<b>To:</b> Martin, Dave (CES, Black Mountain)<br>
<b>Cc:</b> ala-portal@lists.gbif.org; dos Remedios, Nick (CES, Black Mountain); Pedro Corręa; Nicholls, Miles (CES, Black Mountain)<br>
<b>Subject:</b> Re: [Ala-portal] DwC-A loading problems<br>
</font><br>
</div>
<div></div>
<div>
<div dir="ltr">Thanks David,
<div><br>
</div>
<div>We use the DwC term "occurrenceID" to identify the records. It's a unique key.</div>
<div><br>
</div>
<div>
<div>However, when I reload a dataset to update some DwC terms of the records, the system duplicates this data (keeps the old record and creates another with changes). <br>
</div>
</div>
<div><br>
</div>
<div>For instance (update of locality).</div>
<div><br>
</div>
<div>Load 1 ($ <span id="3efa410c-0d2b-4f43-b04a-543d74e896ac" class="GINGER_SOFTWARE_mark">
java</span> -<span id="d9c8d25b-9867-491a-8ea1-bc95b1b11c6b" class="GINGER_SOFTWARE_mark">cp</span><span id="ffb81da4-2604-4c40-bba1-5690705bd701" class="GINGER_SOFTWARE_mark"> .</span><span id="3c9ff585-b63e-44dc-88e6-97346e9225b5" class="GINGER_SOFTWARE_mark">:</span><span id="baa905c9-4038-404e-9beb-29cdd33a83bd" class="GINGER_SOFTWARE_mark">biocache</span><span id="31c7c582-5f2b-402d-88ae-17112fd0cd1f" class="GINGER_SOFTWARE_mark">.</span>jar
au.org.ala.util.DwcCSVLoader dr0 -l dataset.csv -<span id="ea715af4-5888-48a1-84f1-6a6b357a0fcc" class="GINGER_SOFTWARE_mark">b</span> true)</div>
<div><br>
</div>
<div><font color="#38761d">{<span id="0d5a3d17-eb60-4df8-8eba-98ab1dbf8292" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 1, municipality: Sao Paulo,<span id="d9be3258-859e-4b79-acff-17bc926b45b0" class="GINGER_SOFTWARE_mark"> ...</span>},</font></div>
<div><font color="#3d85c6">{<span id="29b8fd7e-ea33-4f2a-bd34-5b1abf76240e" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 2, municipality: Sao Paulo,<span id="406859bf-9ddc-4eea-b77c-6d9fcc7741c4" class="GINGER_SOFTWARE_mark"> ...</span>}</font></div>
<div><br>
</div>
<div>Process 1 (biocache$ process dr0)</div>
<div>Index 1 (biocache$ index dr0)</div>
<div><br>
</div>
<div>Load 2 (updated records and new records) (($ <span id="b1aa9990-7f4c-47a6-824b-28fd33f3c3c9" class="GINGER_SOFTWARE_mark">java</span> -<span id="fb3389f4-14a1-4b88-b1b3-9a2ec6b03b98" class="GINGER_SOFTWARE_mark">cp</span><span id="0d38fa6e-f8bf-4451-bf7b-3ffe24f44a5f" class="GINGER_SOFTWARE_mark"> .</span><span id="769d7228-ec95-40c6-9708-ca4704bddd10" class="GINGER_SOFTWARE_mark">:</span><span id="16cc0b29-e143-4f56-b2f5-1f56e4c85579" class="GINGER_SOFTWARE_mark">biocache</span><span id="38a71ca4-0207-4c15-bfa8-9947a7d23827" class="GINGER_SOFTWARE_mark">.</span>jar
au.org.ala.util.DwcCSVLoader dr0 -l dataset-updated<span id="fc541191-25d4-459a-8a7d-b3298e4d8d65" class="GINGER_SOFTWARE_mark">.</span><span id="545f3e37-56a8-48e8-981c-4895661449d8" class="GINGER_SOFTWARE_mark">csv</span> -<span id="3f7b5a12-0f36-4bf2-ad10-7a6f34134680" class="GINGER_SOFTWARE_mark">b</span> true)</div>
<div>
<div><br>
</div>
<div><font color="#38761d">{<span id="af714c92-e9cd-4a3b-9790-626cbad14b1f" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 1, </font><span style="color:rgb(56,118,29)">municipality</span><font color="#38761d">: Rio de Janeiro,<span id="a0217845-7eeb-4755-9247-183626153370" class="GINGER_SOFTWARE_mark"> ...</span>},</font></div>
<div><font color="#3d85c6">{<span id="da447ce1-dee2-4584-b4d2-10cf2b699302" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: Rio de Janeiro,<span id="7df68567-83c4-4653-a56d-874e65e40fad" class="GINGER_SOFTWARE_mark"> ...</span>},</font></div>
</div>
<div>{<span id="04340ea5-32fa-4b56-99e5-a84a831a2ae5" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 3, municipality: Sao Paulo,<span id="d35ff14b-cbc6-456f-9981-4e98ac79a547" class="GINGER_SOFTWARE_mark"> ...</span>}<br>
</div>
<div><br>
</div>
<div>
<div>Process 2 (biocache$ process dr0)</div>
<div>Index 2 (biocache$ index dr0)</div>
</div>
<div><br>
</div>
<div>Results shown by ALA:</div>
<div><br>
</div>
<div>
<div><font color="#38761d">{<span id="82163306-055e-446a-b419-a4b2833dc642" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 1, </font><span style="color:rgb(56,118,29)">municipality</span><font color="#38761d">: </font><span style="color:rgb(56,118,29)">Sao
Paulo</span><font color="#38761d">,<span id="b243e37e-8d69-4d90-b8b5-d138a2667e8c" class="GINGER_SOFTWARE_mark"> ...</span>},</font></div>
<div><font color="#3d85c6">{<span id="97902fda-0410-41eb-a3d5-6afc8c894146" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: </font><span style="color:rgb(61,133,198)">Sao
Paulo</span><font color="#3d85c6">,<span id="dedde570-ce77-47c7-bc9a-4bb518b7884c" class="GINGER_SOFTWARE_mark"> ...</span>},</font></div>
</div>
<div>
<div>
<div><font color="#38761d">{<span id="8e9b8e3f-d21f-468a-972e-5f21b569d46a" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 1, </font><span style="color:rgb(56,118,29)">municipality</span><font color="#38761d">: </font><span style="color:rgb(56,118,29)">Rio
de Janeiro</span><font color="#38761d">,<span id="1b84c27d-47ca-43f5-a22d-51da444f1e40" class="GINGER_SOFTWARE_mark"> ...</span>},</font></div>
<div><font color="#3d85c6">{<span id="90ad797f-ebd4-4501-81f4-f33200e11fab" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: </font><span style="color:rgb(61,133,198)">Rio
de Janeiro</span><font color="#3d85c6">,<span id="813b02f3-e9ba-44f1-82c8-9c270b4b5292" class="GINGER_SOFTWARE_mark"> ...</span>}</font></div>
</div>
</div>
<div>{<span id="9efc202b-9746-4e15-965a-deeee1803fe7" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 3, municipality: Sao Paulo,<span id="8217fb6a-e53e-43fb-b778-0661a2c12843" class="GINGER_SOFTWARE_mark"> ...</span>}<br>
</div>
<div><br>
</div>
<div>But I expected:</div>
<div><br>
</div>
<div>
<div><span style="color:rgb(56,118,29)">{<span id="b1087731-22c3-46fe-aac5-b47a7149ff3b" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 1, </span><span style="color:rgb(56,118,29)">municipality</span><span style="color:rgb(56,118,29)">: </span><span style="color:rgb(56,118,29)">Rio
de Janeiro</span><span style="color:rgb(56,118,29)">,<span id="1bcca153-06c5-441a-b07b-128cc02e8006" class="GINGER_SOFTWARE_mark"> ...</span>},</span><br>
</div>
<div>
<div><font color="#3d85c6">{<span id="66dd30b3-bc93-44d5-821c-e91cd600b01f" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 2, </font><span style="color:rgb(61,133,198)">municipality</span><font color="#3d85c6">: </font><span style="color:rgb(61,133,198)">Rio
de Janeiro</span><font color="#3d85c6">,<span id="cc097dbb-acf0-44d0-a610-6beda16e8061" class="GINGER_SOFTWARE_mark"> ...</span>}</font></div>
</div>
<div>{<span id="f6d00885-eaac-4db8-b0c4-f4e8f7697fd4" class="GINGER_SOFTWARE_mark">OccurrenceID</span>: 3, municipality: Sao Paulo,<span id="186d1073-0a9b-410a-851e-07d36737a7d8" class="GINGER_SOFTWARE_mark"> ...</span>}</div>
</div>
<div><br>
</div>
<div>I need to delete (delete-resource function) existing data before the reload? If no, what I did wrong to generate this data duplication?</div>
<div><br>
</div>
<div>Thanks! </div>
<div><br>
</div>
<div><br>
</div>
<div>Regards,</div>
<div><br>
</div>
<div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
Daniel Lins da Silva</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<div class="gmail_extra"><font color="#000000">Research Center <span id="94fa7a93-d70b-4b91-9671-29699a404506" class="GINGER_SOFTWARE_mark">on</span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
</div>
<div><br>
</div>
<div><br>
</div>
<div> </div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">2014-05-07 0:46 GMT-03:00 <span dir="ltr"><<a href="mailto:David.Martin@csiro.au" target="_blank">David.Martin@csiro.au</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex; border-left:1px #ccc solid; padding-left:1ex">
<div>
<div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt">
<div>
<div>Thanks Daniel. Natasha has now left the ALA.</div>
<div><br>
</div>
<div>The uniqueness of records is determined by information stored in the collectory. See screenshot [1].</div>
<div><span style="font-size:10pt">By default, "catalogNumber" is used but you can change this to any number of fields that should be stable in the data. </span></div>
<div>Using unstable fields for the ID isn't recommended (e.g. scientificName). To update the records, the process is to just re-load the dataset.</div>
<div><br>
</div>
<div>Automatically loaded - this isnt in use and we may remove from the UI in future iterations.</div>
<div>Incremental Load - affects the sample/process/index steps to only run these against the new records. Load is always incremental based on the key field(s) but if the incremental load box isn’t checked it runs the sample/process/index steps against the
whole data set. This can cause a large processing overhead when there’s a minor update to a large data set.</div>
<div><br>
</div>
<div>Cheers</div>
<div><br>
</div>
<div>Dave Martin</div>
</div>
<div>ALA</div>
<div><br>
</div>
<div>[1] <a href="http://bit.ly/1g72HFN" style="font-size:10pt" target="_blank">http://bit.ly/1g72HFN</a></div>
<div><br>
</div>
<div style="font-family:Times New Roman; color:#000000; font-size:16px">
<hr>
<div style="direction:ltr"><font face="Tahoma" color="#000000"><b>From:</b> Daniel Lins [<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>]<br>
<b>Sent:</b> 05 May 2014 15:39<br>
<b>To:</b> Quimby, Natasha (CES, Black Mountain)<br>
<b>Cc:</b> <a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a>; dos Remedios, Nick (CES, Black Mountain); Martin, Dave (CES, Black Mountain); Pedro Corręa<br>
<b>Subject:</b> Re: [Ala-portal] DwC-A loading problems<br>
</font><br>
</div>
<div>
<div class="h5">
<div></div>
<div>
<div dir="ltr">
<div>
<div>Hi Natasha, </div>
<div><br>
</div>
<div>I managed to import the DwC-A file following the steps reported in the previous email. Thank you!</div>
<div><br>
</div>
<div>However, when I tried to update some metadata of an occurrence record (already stored in the database), the system created a new record with these duplicated information. So I started to have several records with the same
<span>occurrenceID</span> (I did set in the data resource configuration to use "OcurrenceID" to uniquely identify a record).</div>
<div><br>
</div>
<div>How can I update existing records in the database? For instance, the location's metadata of an occurrence record stored in my database?</div>
<div><br>
</div>
<div>I also would like to better understand the behavior of the properties "Automatically loaded" and "Incremental Load". </div>
</div>
<div><br>
</div>
<div>Thanks!!</div>
<div><br>
</div>
<div>Regards,</div>
<div><br>
</div>
<div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
Daniel Lins da Silva</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<div class="gmail_extra"><font color="#000000">Research Center <span>on</span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px; color:rgb(136,136,136)">
<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
</div>
<div class="gmail_extra"><br>
<br>
<div class="gmail_quote">2014-04-28 3:52 GMT-03:00 Daniel Lins <span dir="ltr"><<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>></span>:<br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div dir="ltr">Thanks Natasha!
<div><br>
</div>
<div>I will try your recommendations. Once finished, I will contact you.</div>
<div><br>
</div>
<div>Regards<br>
</div>
<div class="gmail_extra">
<div><br>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
Daniel Lins da Silva</div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<div class="gmail_extra"><font color="#000000">Research Center <span><span>on</span></span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
</div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<br>
</div>
<div class="gmail_extra" style="color:rgb(136,136,136); font-family:arial,sans-serif; font-size:13px">
<br>
</div>
<br>
</div>
<div class="gmail_quote">2014-04-28 3:26 GMT-03:00 <span dir="ltr"><<a href="mailto:Natasha.Quimby@csiro.au" target="_blank">Natasha.Quimby@csiro.au</a></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr"></span><span dir="ltr">></span><span>:</span><span></span><span></span><span></span>
<div>
<div><br>
<blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex; border-left-width:1px; border-left-color:rgb(204,204,204); border-left-style:solid; padding-left:1ex">
<div style="font-size:14px; font-family:Calibri,sans-serif; word-wrap:break-word">
<div>Hi Daniel,</div>
<div><br>
</div>
<div>When you specify a local DwcA Load the archive needs to be unzipped. Try unzipping <b>2f676abc-4503-489e-8f0c-fcb6e1bc554b<span><span>.</span></span>zip
</b>and then running the following:</div>
<div>
<div><span><span>s<b>udo</b></span><b></b><b></b><b></b></span><b> <span><span>java</span></span> -<span><span>cp</span></span><span><span> .</span></span>:biocache.jar au.org.ala.util.DwCALoader dr7 -l /data/collectory/upload/1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b</b></div>
<div><b><br>
</b></div>
</div>
<div>If you configure the <span><span>collectory</span></span> to provide the <span>
<span>dwca</span></span> the <span><span>biocache</span></span> automatically unzips the archive for you. You would need to configure dr7 with the following connection parameters:</div>
<div><br>
</div>
<div>"<span><span>protocol</span></span>":"DwCA"</div>
<div>"<span><span>termsForUniqueKey</span></span>"<span><span>:</span></span>["<span><span>occurrenceID</span></span>"],</div>
<div><span>"url":"file:////data/collectory/upload/</span>1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b.zip<span>"</span></div>
<div><b><br>
</b></div>
<div>You could then load the resource by:</div>
<div>
<div><span><span>s<b>udo</b></span><b></b><b></b><b></b></span><b> <span><span>java</span></span> -<span><span>cp</span></span><span><span> .</span></span><span><span>:</span></span><span><span>biocache</span></span><span><span>.</span></span>jar au.org.ala.util.DwCALoader
dr7</b></div>
<div><b><br>
</b></div>
</div>
<div>If you continue to have <span><span>issues please</span></span> let us know. </div>
<div><br>
</div>
<div>Hope that this helps.</div>
<div><br>
</div>
<div>Regards</div>
<div>Natasha</div>
<div><br>
</div>
<span>
<div style="border-width:1pt medium medium; border-style:solid none none; padding:3pt 0in 0in; text-align:left; font-size:11pt; font-family:Calibri; border-top-color:rgb(181,196,223)">
<span style="font-weight:bold">From: </span>Daniel Lins <<a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a>><br>
<span style="font-weight:bold">Date: </span>Monday, 28 April 2014 3:54 PM<br>
<span style="font-weight:bold">To: </span><span><span>"<a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a>" <<a href="mailto:ala-portal@lists.gbif.org" target="_blank">ala-portal@lists.gbif.org</a></span><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a></span><a href="mailto:ala-portal@lists.gbif.org" target="_blank"></a><span><span>>,</span></span>
"dos Remedios, Nick (CES, Black Mountain)" <<a href="mailto:Nick.Dosremedios@csiro.au" target="_blank">Nick.Dosremedios@csiro.au</a><span><span>>,</span></span> "Martin, Dave (CES, Black Mountain)" <<a href="mailto:David.Martin@csiro.au" target="_blank">David.Martin@csiro.au</a>><br>
<span style="font-weight:bold">Subject: </span>[Ala-portal] DwC-A loading <span><span>problems</span></span><br>
</div>
<div>
<div>
<div><br>
</div>
<blockquote style="border-left:#b5c4df 5 solid; padding:0 0 0 5; margin:0 0 0 5">
<div>
<div>
<div dir="ltr">Hi Nick and Dave,
<div><br>
</div>
<div>We are having some problems in Biocache during the upload of DwC-A files.</div>
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<div>As shown below, after run the method "au.org.ala.util.DwCALoader", our system returns the error message
<font color="#ff0000">"Exception in thread "main" org<span><span>.</span></span><span><span>gbif</span></span><span><span>.</span></span><span><span>dwc</span></span><span><span>.</span></span>text<span><span>.</span></span>UnkownDelimitersException: Unable
to detect field delimiter"</font></div>
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<div>I accomplished tests using DwC-A files with tab-delimited text files and comma-delimited text files. In both cases the error generated was the same.</div>
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<div>What causes these problems? (** CSV Loader works great)<br>
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<div><b><i><span><span><span>tab</span></span></span>-delimited file test</i></b></div>
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<div>poliusp@poliusp-VirtualBox:~/dev/biocache$ s<b>udo java -cp .:biocache.jar au.org.ala.util.DwCALoader dr7 -l /data/collectory/upload/1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b.zip</b></div>
<div>2014-04-28 01:44:02,837 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Loading configuration from /data/biocache/config/biocache-config.properties</div>
<div>2014-04-28 01:44:03,090 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Initialise SOLR</div>
<div>2014-04-28 01:44:03,103 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] -
<span><span><span>Initialise</span></span></span> name matching indexes</div>
<div>2014-04-28 01:44:03,605 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Initialise persistence manager</div>
<div>2014-04-28 01:44:03,606 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Configure complete</div>
<div>Loading archive /data/<span><span><span>collectory</span></span></span>/upload/1398658607824/2f676abc-4503-489e-8f0c-fcb6e1bc554b<span><span><span>.</span></span></span>zip for resource dr7 with unique terms List<span><span><span>(</span></span></span><span><span><span>dwc</span></span></span><span><span><span>:</span></span></span><span><span><span>occurrenceID</span></span></span>)
stripping spaces false incremental false testing <span><span><span>false</span></span></span></div>
<div><b>Exception in thread "main" org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span><span><span><span>dwc</span></span></span><span><span><span>.</span></span></span>text<span><span><span>.</span></span></span>UnkownDelimitersException:
Unable to detect field delimiter</b></div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span>file<span><span><span>.</span></span></span>CSVReaderFactory<span><span><span>.</span></span></span><span><span><span>buildArchiveFile</span></span></span><span><span><span>(</span></span></span>CSVReaderFactory.java<span><span><span>:</span></span></span>129)</div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span>file<span><span><span>.</span></span></span>CSVReaderFactory<span><span><span>.</span></span></span>build<span><span><span>(</span></span></span>CSVReaderFactory.java<span><span><span>:</span></span></span>46)</div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span><span><span><span>dwc</span></span></span><span><span><span>.</span></span></span>text<span><span><span>.</span></span></span>ArchiveFactory<span><span><span>.</span></span></span><span><span><span>readFileHeaders</span></span></span><span><span><span>(</span></span></span>ArchiveFactory.java<span><span><span>:</span></span></span>344)</div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span><span><span><span>dwc</span></span></span><span><span><span>.</span></span></span>text<span><span><span>.</span></span></span>ArchiveFactory<span><span><span>.</span></span></span><span><span><span>openArchive</span></span></span><span><span><span>(</span></span></span>ArchiveFactory.java<span><span><span>:</span></span></span>289)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader.loadArchive(DwCALoader.scala:129)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader.loadLocal(DwCALoader.scala:106)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader$.main(DwCALoader.scala:52)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader.main(DwCALoader.scala)</div>
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<div><b><i><span><span><span>comma</span></span></span>-delimited file test</i></b><br>
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<div>poliusp@poliusp-VirtualBox:~/dev/biocache$ <b>sudo java -cp .:biocache.jar au.org.ala.util.DwCALoader dr7 -l ./<span><span><span>dwca</span></span></span>-teste3<span><span><span>.</span></span></span>zip</b></div>
<div>2014-04-28 01:56:04,683 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Loading configuration from /data/biocache/config/biocache-config.properties</div>
<div>2014-04-28 01:56:04,940 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Initialise SOLR</div>
<div>2014-04-28 01:56:04,951 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] -
<span><span><span>Initialise</span></span></span> name matching indexes</div>
<div>2014-04-28 01:56:05,437 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Initialise persistence manager</div>
<div>2014-04-28 01:56:05,438 INFO<span><span><span> :</span></span></span> [<span><span><span>ConfigModule</span></span></span>] - Configure complete</div>
<div>Loading archive<span><span><span> .</span></span></span>/<span><span><span>dwca</span></span></span>-teste3<span><span><span>.</span></span></span>zip for resource dr7 with unique terms List<span><span><span>(</span></span></span><span><span><span>dwc</span></span></span><span><span><span>:</span></span></span><span><span><span>occurrenceID</span></span></span>)
stripping spaces false incremental false testing <span><span><span>false</span></span></span></div>
<div><b>Exception in thread "main" org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span><span><span><span>dwc</span></span></span><span><span><span>.</span></span></span>text<span><span><span>.</span></span></span>UnkownDelimitersException:
Unable to detect field delimiter</b></div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span>file<span><span><span>.</span></span></span>CSVReaderFactory<span><span><span>.</span></span></span><span><span><span>buildArchiveFile</span></span></span><span><span><span>(</span></span></span>CSVReaderFactory.java<span><span><span>:</span></span></span>129)</div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span>file<span><span><span>.</span></span></span>CSVReaderFactory<span><span><span>.</span></span></span>build<span><span><span>(</span></span></span>CSVReaderFactory.java<span><span><span>:</span></span></span>46)</div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span><span><span><span>dwc</span></span></span><span><span><span>.</span></span></span>text<span><span><span>.</span></span></span>ArchiveFactory<span><span><span>.</span></span></span><span><span><span>readFileHeaders</span></span></span><span><span><span>(</span></span></span>ArchiveFactory.java<span><span><span>:</span></span></span>344)</div>
<div> <span><span><span>at</span></span></span> org<span><span><span>.</span></span></span><span><span><span>gbif</span></span></span><span><span><span>.</span></span></span><span><span><span>dwc</span></span></span><span><span><span>.</span></span></span>text<span><span><span>.</span></span></span>ArchiveFactory<span><span><span>.</span></span></span><span><span><span>openArchive</span></span></span><span><span><span>(</span></span></span>ArchiveFactory.java<span><span><span>:</span></span></span>289)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader.loadArchive(DwCALoader.scala:129)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader.loadLocal(DwCALoader.scala:106)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader$.main(DwCALoader.scala:52)</div>
<div> <span><span><span>at</span></span></span> au.org.ala.util.DwCALoader.main(DwCALoader.scala)</div>
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<div>Thanks!</div>
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<div>Regards.</div>
-- <br>
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<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px">Daniel Lins da Silva</div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px">(Mobile) <a href="tel:55%2011%2096144-4050" value="+5511961444050" target="_blank">55 11 96144-4050</a></div>
<div style="font-family:arial,sans-serif; font-size:13px">
<div class="gmail_extra"><font color="#000000">Research Center <span><span><span>on</span></span></span> Biodiversity and Computing (Biocomp)</font></div>
<div class="gmail_extra"><font color="#000000">University of Sao Paulo, Brazil</font></div>
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<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px"><a href="mailto:daniellins@usp.br" target="_blank">daniellins@usp.br</a></div>
<div class="gmail_extra" style="font-family:arial,sans-serif; font-size:13px"><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a></div>
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-- <br>
<div>Daniel Lins da Silva<br>
(<span>Cel</span>) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
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-- <br>
<div>Daniel Lins da Silva<br>
(<span>Cel</span>) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
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-- <br>
<div>Daniel Lins da Silva<br>
(Cel) 11 6144-4050</div>
<div><a href="mailto:daniel.lins@gmail.com" target="_blank">daniel.lins@gmail.com</a><br>
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