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<div>Thanks Allan, Paulo, Tim.</div>
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<div>We appreciate your efforts in setting this software upm locally, and thanks for emailing the list.</div>
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<div>1) Versioning </div>
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<div>While we are on the track of making this software re-usable by other projects/organisations, it is still very early days. Versioning and packaging are things that we need to tackle properly in the 3 month evaulation period [2] and we are working with GBIF
on the best approach here (see Tim's email regarding Ansible). To date, the ALA environment itself is the only place these components are used in production and we manage these closely ourselves. We havent had a need to tightly version components, but as other
projects become reliant we need to do this properly. At this point it time, I'd recommend ignoring developments on branches within SVN. </div>
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<div>2) ala-name-generator</div>
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<div>We didn't anticipate that other projects would be using the ala-name-generator code at this stage (or at all), and instead would rely on the Catalogue of Life names lucene index we've produced [1]. The ala-name-generator code as it currently is isnt suitable
for use outside the Australian context. It is dealing with some of the quirks of Australian species lists and merging some elements from different sources. We should have marked wikis to that effect.</div>
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<div>That said, we appreciate the need for other projects to use their own taxonomic checklists. This was something I'd hope we tackle in the 3 month evaluation period [2]. There's a few of potential approaches here we are exploring and we'll email this list
soon with some progress on this front. I suggest in the meantime, projects make use of the existing index [1].</div>
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<div>Thanks again,</div>
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<div>Dave Martin</div>
<div>ALA</div>
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<div>[1] http://biocache.ala.org.au/archives/col_namematching.tgz</div>
<div>[2] See GBIF's email sent 21st Feb 2014 - "Biodiversity data portals: Using the ALA tooling"</div>
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<span style="font-weight:bold">From: </span>"Tim Robertson [GBIF]" <<a href="mailto:trobertson@gbif.org">trobertson@gbif.org</a>><br>
<span style="font-weight:bold">Date: </span>Thursday, 13 March 2014 2:16 am<br>
<span style="font-weight:bold">To: </span>Paulo André <<a href="mailto:pfilipak@gmail.com">pfilipak@gmail.com</a>><br>
<span style="font-weight:bold">Cc: </span>"<a href="mailto:Ala-portal@lists.gbif.org">Ala-portal@lists.gbif.org</a>" <<a href="mailto:Ala-portal@lists.gbif.org">Ala-portal@lists.gbif.org</a>><br>
<span style="font-weight:bold">Subject: </span>Re: [Ala-portal] Names Generator Issues<br>
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Hi Paulo
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<div>Those are all good comments - I'll make sure the ALA dev team are following those issues. </div>
<div>As this goes forward, it is clear that code releases are going to be needed, so we get immutable binaries in nexus and tagged SVN branches. I'll try and raise this with Dave Martin.</div>
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<div>I'll try and follow the resolutions for the issues you log, build an artifact and verify the same results. </div>
<div>I'm not so much into scala, but IIRC I saw that issue with another artifact. The solution was to run this before running the command line:</div>
<div> jar -xf ala-names-generator-1.0-SNAPSHOT-assembly.jar lib</div>
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<div>I found this in the way they run the biocache command line tools in:</div>
<div> <a href="https://ala-portal.googlecode.com/svn/trunk/biocache-install/ubuntu/install.sh">https://ala-portal.googlecode.com/svn/trunk/biocache-install/ubuntu/install.sh</a></div>
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<div>It may not be the solution, but worth trying.</div>
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<div>I hope this helps,</div>
<div>Tim</div>
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<div>On Mar 12, 2014, at 3:57 PM, Paulo André wrote:</div>
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<div dir="ltr">Tim
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<div>I had have several issues on <a href="https://code.google.com/p/ala-portal/source/browse/#svn/trunk/ala-names-generator" target="_blank" style="font-size:13px;font-family:arial,sans-serif">https://code.google.com/p/ala-portal/source/browse/#svn%2Ftrunk%2Fala-names-generator</a></div>
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<div>I wrote on Jira: <a href="http://dev.gbif.org/issues/browse/ALA">http://dev.gbif.org/issues/browse/ALA</a></div>
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<div>[]'s</div>
<div>Paulo Andre Filipak</div>
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<div class="gmail_quote">2014-03-12 11:51 GMT-03:00 Tim Robertson [GBIF] <span dir="ltr">
<<a href="mailto:trobertson@gbif.org" target="_blank">trobertson@gbif.org</a>></span>:<br>
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<div>Hi Allan,</div>
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<div>I am sure the ALA folks will comment when they wake up. But...</div>
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<div>It doesn't appear to be published as an artifact in the ALA maven repository: </div>
<div> <a href="http://maven.ala.org.au/repository/au/org/ala/" target="_blank">http://maven.ala.org.au/repository/au/org/ala/</a></div>
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<div>You could build from source from: <a href="https://code.google.com/p/ala-portal/source/browse/#svn/trunk/ala-names-generator" target="_blank">https://code.google.com/p/ala-portal/source/browse/#svn%2Ftrunk%2Fala-names-generator</a></div>
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<div>I presume using something along the lines of "mvn clean assembly:assembly"</div>
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<div>I hope this helps provide some options,</div>
<div>Tim</div>
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<div>On Mar 12, 2014, at 3:32 PM, Allan Koch wrote:</div>
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<div>Does anyone knows where I can download this jar: <b>ala-names-generator-1.0-SNAPSHOT-assembly.jar</b>?<b></b><br>
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I´m trying to generate a new Taxon Name List based on NSL for the Biocache processing.
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This instructions has been followed:<br>
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<a href="http://code.google.com/p/ala-portal/wiki/UpgradeALANames" target="_blank">http://code.google.com/p/ala-portal/wiki/UpgradeALANames</a><br>
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According the instructions, I need to run this command:<br>
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java -Xmx1G -Xms1G -cp .:ala-names-generator-1.0-SNAPSHOT-assembly.jar au.org.ala.names.NamesGenerator --all
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But, I can´t find this JAR.<br>
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<div>We are trying to build the Scala Project, but we are having some troubles.<br>
Would help me, for while, if I could run a ready JAR.<br>
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Best regards,<br>
<br clear="all">
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<div dir="ltr">Allan Koch Veiga<br>
<br>
Research Center on Biodiversity and Computing - BioComp<br>
University of São Paulo<br>
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Laboratório de Automação Agrícola - LAA
<div>Depto. de Engenharia de Computação e Sistemas Digitais - PCS<br>
Engenharia Elétrica - Escola Politécnica da USP<br>
Celular: <a href="tel:%2B55%2011%2098401-2277" value="+5511984012277" target="_blank">
+55 11 98401-2277</a><br>
Email: <a href="mailto:allan.kv@usp.br" target="_blank">allan.kv@usp.br</a><br>
<br>
"<i>Stay hungry, stay foolish.</i>" Stewart Brand<br>
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Tim Robertson - GBIF Head of Informatics - <a href="mailto:trobertson@gbif.org" target="_blank">
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Global Biodiversity Information Facility <a href="http://www.gbif.org/" target="_blank">
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GBIF Secretariat, Universitetsparken 15, DK-2100 Copenhagen Ø, Denmark</div>
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Tel: <a href="tel:%2B45%203532%201487" value="+4535321487" target="_blank">+45 3532 1487</a><span> <span> </span></span>Mob:
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<a href="tel:%2B45%202875%201480" value="+4528751480" target="_blank">+45 2875 1480</a></div>
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Tim Robertson - GBIF Head of Informatics - <a href="mailto:trobertson@gbif.org">trobertson@gbif.org</a></p>
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Global Biodiversity Information Facility <a href="http://www.gbif.org/">http://www.gbif.org/</a></p>
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GBIF Secretariat, Universitetsparken 15, DK-2100 Copenhagen Ø, Denmark</p>
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Tel: +45 3532 1487<span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Mob: +45 2826 1487<span class="Apple-converted-space"> <span class="Apple-converted-space"> </span></span>Fax: +45 2875 1480</p>
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